[Jalview-discuss] Web start failing if caching turned off

Fred Ludlow fred.ludlow at gmail.com
Wed Jan 11 13:22:42 GMT 2012


Awesome, works here too!


but (and there's always a but...) I was trying to use the web start version
so I could see if a different bug was fixed in the latest jalview before
reporting it.


If I do the following steps:

Fetch Sequences -> Uniprot P00325 (alcohol dehydrogenase)
Right click on sequence name -> Structure -> View all 9 structures

This gives me a jmol window with an error message at the top saying file
not found, the filepath it gives is:
C:\Documents and
Settings\username\Desktop\DOCUME~1usernameLOCALS~1Tempjalview..... etc

so it looks like somewhere the temporary path is getting mangled

If I try and load the structures sequentially, the first one loads, but
subsequent ones give a similar error in the console log:

FileManager opening C:\Documents and
Settings\fludlow\Desktop\DOCUME~1fludlowLOCALS~1Tempjalview1776115461567806960.xml
file ERROR: java.io.FileNotFoundException: C:\Documents and
Settings\fludlow\Desktop\DOCUME~1fludlowLOCALS~1Tempjalview1776115461567806960.xml
(The system cannot find the file specified)
openFiles(2) 16 ms
eval ERROR: java.io.FileNotFoundException: C:\Documents and
Settings\fludlow\Desktop\DOCUME~1fludlowLOCALS~1Tempjalview1776115461567806960.xml
(The system cannot find the file specified)
----
         load append
"C:\DOCUME~1\fludlow\LOCALS~1\Temp\jalview3072553079554317356.xml" >>
"C:DOCUME~1fludlowLOCALS~1Tempjalview1776115461567806960.xml" <<


(This is running the web-start version from the link you just sent with
1.6.0_29 on XP).


Thanks again for the very quick fix to the previous issue, and sorry to
report another one (this is the last one I know about!)


Fred



On 11 January 2012 12:29, Jim Procter <foreveremain at gmail.com> wrote:

>  Hi Fred.
>
>
> On 11/01/2012 09:39, Fred Ludlow wrote:
>
>
>  So maybe removing those from the manifest file would fix it, though I'm
> not sure if that would also break something...
>
>  Its working for me after cleaning up some of the older manifests. Have a
> go with this patched version of version 2.7 :
> *
> http://www.compbio.dundee.ac.uk/user/ws-dev1/jalview/release/webstart/jalview.jnlp
>
> *
> Jim.
>
> _______________________________________________
> Jalview-discuss mailing list
> Jalview-discuss at jalview.org
> http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-discuss
>
>
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