[Jalview-discuss] help - one file keeps saying queuing or job error
gjbarton at dundee.ac.uk
Tue Mar 6 16:53:12 GMT 2012
That is a lot of sequences, how long are they?
On 06/03/2012 16:19, Jessie Richer wrote:
> Its DNA sequences and not sure exactly how many.. I'd guess around 700
> I started it this morning at 8 am. It is now 1120 and it still says
> Sent on the TELUS Mobility network with BlackBerry
> *From: *Geoff Barton <gjbarton at dundee.ac.uk>
> *Date: *Tue, 6 Mar 2012 16:05:02 +0000
> *To: *Jessie Richer<j.richer3 at mycanadore.ca>
> *Subject: *Re: [Jalview-discuss] help - one file keeps saying queuing
> or job error
> This is odd, the server seems fine and gives almost instantaneous
> turn-around at the moment.
> Are you sending very large problems?
> How many sequences are you trying to align, how long are they and are
> they DNA/RNA or Protein?
> On 06/03/2012 13:00, Jessie Richer wrote:
>> I have been trying to run a file to align the sequences using clustal
>> w/ defaults. I get one of two things, either it stays on 'queuing'
>> for days, or its starts 'running' and then says job error.
>> my file size is 1007 KB
>> I cant increase the virtual memory since I am using my universities
>> computers and do not have permission to access the program files.
>> All my sequences are in Capital letters (my first file has small
>> letters in some sequences so i fixed this but am still having the
>> same problem)
>> Any suggestions? I have run some files that were larger without any
>> problem - minus they took 5-6 hours to complete.
>> If i need to send the file, it has to be kept confidential (as per my
>> supervisor/professor's request since this is a research project and
>> he has said "data is confidential")
>> Jalview-discuss mailing list
>> Jalview-discuss at jalview.org
> Geoff Barton, Professor of Bioinformatics, College of Life Sciences
> University of Dundee, Scotland, UK.g.j.barton at dundee.ac.uk
> Tel:+44 1382 385860/388731 (Fax:385764)www.compbio.dundee.ac.uk
> The University of Dundee is registered Scottish charity: No.SC015096
Geoff Barton, Professor of Bioinformatics, College of Life Sciences
University of Dundee, Scotland, UK. g.j.barton at dundee.ac.uk
Tel:+44 1382 385860/388731 (Fax:385764) www.compbio.dundee.ac.uk
The University of Dundee is registered Scottish charity: No.SC015096
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