[Jalview-discuss] JalView applet on T-Coffee

[Geoff Barton]

Dear Andrew,

I'm glad you are finding jalview useful in your studies.  I'm not sure 
which particular site you are referring to when you say the Jalview 
applet embedded in T-Coffee.  Jalview is used on many sites as an applet 
including alignment methods at EBI and elsewhere.  If you join and reply 
to the jalview-discuss at jalview.org mailing list then someone should be 
able to help you more.

Kind regards,

Geoff


On 09/03/2012 17:30, Andrew Gerwin wrote:
> Hello,
>
> I have a question pertaining to the applet version of JalView that is 
> embedded in T-Coffee.  I am a high school co-op student working in the 
> University of Guelph's Molecular and Cellular Biology department with 
> the promoter sequences of CBF genes in grape plants.  Recently I 
> discovered JalView as part of T-Coffee and I was intrigued with the 
> vast number of features at my disposal.  Currently, I am primarily 
> interested in the applet version (JalViewLite) but I may soon, with 
> approval from my professor, choose to download and use the full 
> version.  Which of the four links under the applet category on the 
> JalView site will direct me to the same JalView applet that T-Coffee 
> exports to?  Additionally, once loaded, what steps can be taken to 
> completely clear all the data in the applet so that the alignment 
> results of T-Coffee and/or Genomatix DiAlign may display in a similar 
> way as when T-Coffee exports the data directly to the applet?  Thanks 
> for your help.
>
> Sincerely,
>
>
> Andrew Gerwin

-- 
Geoff Barton, Professor of Bioinformatics,  College of Life Sciences
University of Dundee, Scotland, UK.          g.j.barton at dundee.ac.uk
Tel:+44 1382 385860/388731 (Fax:385764)     www.compbio.dundee.ac.uk

The University of Dundee is registered Scottish charity: No.SC015096

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