[Jalview-discuss] PCA

Jessica Richard jricks224 at yahoo.com
Thu Jan 31 16:40:58 GMT 2013

Thanks for all of the suggestions Jim! I'm looking into this now.


 From: Jim Procter <jprocter at compbio.dundee.ac.uk>
To: jalview-discuss at jalview.org 
Sent: Saturday, January 26, 2013 9:49 AM
Subject: Re: [Jalview-discuss] PCA
oops - looks like I'd got some xtra text there:

On Sat Jan 26 15:45:16 2013, Jim Procter wrote:
> It sounds like you are asking about projecting sequences onto the PCA
> model in order to assess how they fit, which would be analogous to a
> common use for ordination based models where new observations are
> evaluated to see how well they fit some existing model.

sorry 'bout that. Also - you might want to check out JDet (at 
http://csbg.cnb.csic.es/JDet/ and https://code.google.com/p/jdet/) - 
since that also allows a residue level PCA to be performed on an 
alignment.. I'd be quite tempted to incorporate JDet's analysis and 
visualization components in Jalview, in fact.


Jalview-discuss mailing list
Jalview-discuss at jalview.org
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://www.compbio.dundee.ac.uk/pipermail/jalview-discuss/attachments/20130131/5002dee1/attachment.html 

More information about the Jalview-discuss mailing list