[Jalview-discuss] Alignment Annotation File - SEQUENCE_REF format
steffen.schmidt at tuebingen.mpg.de
Wed Jan 15 10:23:29 GMT 2014
I your manual about annotation files you describe:
You can associate an annotation with a sequence by preceding its definition with the line:
SEQUENCE_REF seq_name [startIndex]
I wonder what the exact format of seq_name is:
Image I get a fasta file like this:
Do I have to put in the full id or are other variations ok?
SEQUENCE_REF db|183474|my_pet_protein 1
SEQUENCE_REF 183474 1
SEQUENCE_REF my_pet_protein 1
Background: Since most often accession numbers don’t tell you the species name, I would like to add the species info to the sequence name to quickly spot the organism. e.g. my_pet_protein|Escherichia_coli. But then, I would need to change the annotation file seq_name if I can’t use a shorthand…
-------------- next part --------------
An HTML attachment was scrubbed...
More information about the Jalview-discuss