[SSPF]

Target Optimisation Utility

v 2.0

The Barton Group
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Home >> Input sequences >> Orthologues >> Homologues

Query:657
Description:

Sequence statistics Cog Top Hit PDB Top Hit UniRef Top Hit TargetDB Top Hit
Sequence_IDLinks ParCrys ParCrys-Sc OB SeqlenMrGpIcluspIGRAVYSigPSPconf #TMH TMH_span RONNJpred_HJpred_ENetNglycNetOglycNetPhosA280A280_1mg#His#Met#CysCOGclusSubjecteval%idAlenMore..99%qcov99%qcov+99%id eval %idAlenMore eval %id AlenMore..99%qcov99%qcov+99%id eval %idAlen RPSBLAST
NTL01AS0002_ACIAD0002-User S O H Highly amenable9.03e+67.0838242341A5.04-0.5600.0000-00.010.180.411 sites10 sites76800.18785COG0592 PA0002 C1e-9247.26383P108e-7944.24382U D095.55382 T101e-3023.24383RPSblast_results

        Note: clicking 'O' or 'H' (above) links to results for Orthologues/Homologues respectively. Empty table cells indicate no hit/annotation was found

MSA_Information
         To start full Jalview application inside the applet view of MSA click 'File'->'View in Full Application' The full application provides additional functionality, including annotation lookups (DAS) and the ability to save alignment files

Query Status

Step NameStatus
Orthologue searching (BLAST COG) Results Available
Homologue searching (PSIBLAST UniRef100) Results Available
Search Structural Genomics targets (BLAST TargetDB) Results Available
Protein Disorder Prediction (Globplot & Disembl) Results Available
RPSBLAST Search CDD, Pfam, COG, KOG & SMART Results Available
Secondary Structure Prediction (Jpred) Results Available
Calculate elementary chemical properties Results Available
Predict transmembrane regions (TMHMM2) Results Available
Predict signal peptide (SIGNALP) Results Available
Multiple sequence alignment (MUSCLE) Results Available
Search known structures (PSIBLAST PDB) Results Available
Glycosylation site prediction (NetNglyc, NetOglyc) Results Available
Phosphorylation site prediction (NetPhos) Results Available
Protein Disorder Prediction (RONN) Results Available
Protein Crystallisation Propensity prediction (ParCrys & OB-Score) Results Available