[SSPF]

Target Optimisation Utility

v 2.0

The Barton Group
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Query_ID Query Description User Name Time Submitted #Sequences
657 Test_Guest1 guest 2007-10-09 18:24:14 1115 Query Results


Acknowlegements:

Jalview (Clamp et al. (2004) Bioinformatics 20:426)
BLAST, RPSBLAST & PSIBLAST (Altschul et al. (1997) NAR 25:3389)
MUSCLE (Edgar, R. (2004) NAR 32:1792)
Globplot (Linding et al. (2003) NAR 31:3701)
Disembl (Linding et al. (2003) Structure 11:1453)
RONN (Yang et al. (2005) Bioinformatics 21:3369)
SignalP (Emmanauelsson et al. (2007) Nature Protoctols 2:953)
TMHMM2 (Krogh et al. (2001) JMB 305:567)
NetNGlyc (Gupta et al. (2004) http://www.cbs.dtu.dk/services/NetNGlyc/ )
NetOGlyc (Julenius et al. (2005) Glycobiology 15:153)
NetPhos (Blom et al. (1999) JMB 294:1351)
Jpred (Cuff et al. (1998) Bioinformatics 14:892)
OB-Score (Overton & Barton (2006) FEBS Lett. 580:4005)
ParCrys (Overton et al. (2007) in preparation)
COG database (Tatsuov et al. (2003) BMC Bioinformatics 4:41)
PDB (Berman et al. (2007) NAR 35:D301)
TargetDB (Chen et al. (2004) Bioinformatics 20:2680)
InterPro (Apweiler et al. (2001) NAR 29:37-40)
Conserved domain database (CDD) (Marchler-Bauer et al. (2005) NAR 33:D192)
Pfam (Bateman et al. (2004) NAR 32:D138)
SMART (Schultz et al. (1998) PNAS 95:5857)
UniProt (Apweiler et al. (2004) NAR 32:D115)
Bioperl (Stajich et al.(2002) Genome Res. 12:1611)
EMBOSS (Rice et al. (2000) Trends in Genetics 16:276)