Uses of Class
fr.orsay.lri.varna.models.naView.Connection

Packages that use Connection

fr.orsay.lri.varna.models.naView

Uses of Connection in fr.orsay.lri.varna.models.naView

Fields in fr.orsay.lri.varna.models.naView with type parameters of type Connection

private Hashtable<Integer,Connection>	Loop._connections
private ArrayList<Connection>	Loop.connections

Methods in fr.orsay.lri.varna.models.naView that return Connection

Connection

Loop.getConnection(int i)

Methods in fr.orsay.lri.varna.models.naView with parameters of type Connection

void	Loop.addConnection(int i, Connection c)
private boolean	NAView.connected_connection(Connection cp, Connection cpnext) Determines if the connections cp and cpnext are connected
private void	NAView.construct_extruded_segment(Connection cp, Connection cpnext) Constructs the segment between cp and cpnext as a circle if possible.
private int	NAView.find_ic_middle(int icstart, int icend, Connection anchor_connection, Connection acp, Loop lp) Finds the middle of a set of connected connectors.
private void	NAView.generate_region(Connection cp) Generates the coordinates for the base pairing region of a connection given the position of the starting base pair.
void	Loop.setConnection(int i, Connection c)
private void	NAView.traverse_loop(Loop lp, Connection anchor_connection) This is the workhorse of the display program.