fr.orsay.lri.varna.models.rna
Class VARNASecDraw.HelixEmbedding

java.lang.Object
  fr.orsay.lri.varna.models.rna.VARNASecDraw.HelixEmbedding

Enclosing class:

VARNASecDraw

private class VARNASecDraw.HelixEmbedding
extends Object

Field Summary

(package private) ArrayList<VARNASecDraw.HelixEmbedding>	_children
private GeneralPath	_clip
(package private) ArrayList<Integer>	_indices
(package private) VARNASecDraw.PairedPortion	_p
(package private) VARNASecDraw.HelixEmbedding	_parent
(package private) RNA	_r
(package private) Point2D.Double	_support

Constructor Summary

VARNASecDraw.HelixEmbedding(Point2D.Double support, VARNASecDraw.PairedPortion p, RNA r, VARNASecDraw.HelixEmbedding parent)

Method Summary

void	addHelixEmbedding(VARNASecDraw.HelixEmbedding h, int index)
void	cancelMove(int delta)
int	chooseNextMove()
GeneralPath	getShape()
private void	placeTerminalLoop(ArrayList<ModeleBase> mbl, RNA r)
void	reflectCoordinates()
void	rotate(double angle)
String	toString()
private void	transform(AffineTransform a)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

_clip

private GeneralPath _clip

_support

Point2D.Double _support

_children

ArrayList<VARNASecDraw.HelixEmbedding> _children

_indices

ArrayList<Integer> _indices

_p

VARNASecDraw.PairedPortion _p

_r

RNA _r

_parent

VARNASecDraw.HelixEmbedding _parent

Constructor Detail

VARNASecDraw.HelixEmbedding

public VARNASecDraw.HelixEmbedding(Point2D.Double support,
                                   VARNASecDraw.PairedPortion p,
                                   RNA r,
                                   VARNASecDraw.HelixEmbedding parent)

Method Detail

addHelixEmbedding

public void addHelixEmbedding(VARNASecDraw.HelixEmbedding h,
                              int index)

getShape

public GeneralPath getShape()

chooseNextMove

public int chooseNextMove()

cancelMove

public void cancelMove(int delta)

rotate

public void rotate(double angle)

transform

private void transform(AffineTransform a)

reflectCoordinates

public void reflectCoordinates()

placeTerminalLoop

private void placeTerminalLoop(ArrayList<ModeleBase> mbl,
                               RNA r)

toString

public String toString()

Overrides:

toString in class Object