fr.orsay.lri.varna.models.rna
Class VARNASecDraw.PairedPortion

java.lang.Object
  fr.orsay.lri.varna.models.rna.VARNASecDraw.Portion
      fr.orsay.lri.varna.models.rna.VARNASecDraw.PairedPortion

Enclosing class:

VARNASecDraw

public class VARNASecDraw.PairedPortion
extends VARNASecDraw.Portion

Field Summary

(package private) int	_len
(package private) int	_pos1
(package private) int	_pos2
(package private) VARNASecDraw.RNATree	_r

Constructor Summary

VARNASecDraw.PairedPortion(int pos1, int pos2, int len, VARNASecDraw.RNATree r)

Method Summary

ArrayList<Integer>	getBaseList()
GeneralPath	getLocalOutline(RNA r)
int	getNumBases()
GeneralPath	getOutline(RNA r)
GeneralPath	getOutline(RNA r, boolean local)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

_pos1

int _pos1

_pos2

int _pos2

_len

int _len

_r

VARNASecDraw.RNATree _r

Constructor Detail

VARNASecDraw.PairedPortion

public VARNASecDraw.PairedPortion(int pos1,
                                  int pos2,
                                  int len,
                                  VARNASecDraw.RNATree r)

Method Detail

getBaseList

public ArrayList<Integer> getBaseList()

Specified by:

getBaseList in class VARNASecDraw.Portion

toString

public String toString()

Overrides:

toString in class Object

getNumBases

public int getNumBases()

Specified by:

getNumBases in class VARNASecDraw.Portion

getLocalOutline

public GeneralPath getLocalOutline(RNA r)

getOutline

public GeneralPath getOutline(RNA r)

Specified by:

getOutline in class VARNASecDraw.Portion

getOutline

public GeneralPath getOutline(RNA r,
                              boolean local)