Uses of Class
fr.orsay.lri.varna.models.templates.RNATemplate

Packages that use RNATemplate

fr.orsay.lri.varna.models.rna
fr.orsay.lri.varna.models.templates

Uses of RNATemplate in fr.orsay.lri.varna.models.rna

Methods in fr.orsay.lri.varna.models.rna with parameters of type RNATemplate

RNATemplateMapping	RNA.drawRNATemplate(RNATemplate template) Same as below, with default helixLengthAdjustmentMethod.
RNATemplateMapping	RNA.drawRNATemplate(RNATemplate template, int helixLengthAdjustmentMethod) Draw this RNA like the given template.

Uses of RNATemplate in fr.orsay.lri.varna.models.templates

Fields in fr.orsay.lri.varna.models.templates declared as RNATemplate

private RNATemplate

RNATemplate.template Variable containing "this", used by the internal class to access this object.

Methods in fr.orsay.lri.varna.models.templates that return RNATemplate

static RNATemplate	RNATemplate.fromXMLDocument(Document xmlDocument)
static RNATemplate	RNATemplate.fromXMLFile(File file)
RNATemplate	RNATemplate.RNATemplateElement.getParentTemplate() Returns the template to which this endpoint belongs.

Methods in fr.orsay.lri.varna.models.templates with parameters of type RNATemplate

static TreeAlignResult<RNANodeValue2,RNANodeValueTemplate>	RNATemplateAlign.alignRNAWithTemplate(RNA rna, RNATemplate template) Align the given RNA with the given RNA template.
static RNATemplateMapping	RNATemplateAlign.mapRNAWithTemplate(RNA rna, RNATemplate template) Map an RNA with an RNATemplate using tree alignment.
static void	RNATemplateAlign.printMapping(RNATemplateMapping mapping, RNATemplate template, String sequence)