Uses of Class
fr.orsay.lri.varna.models.templates.RNATemplateMapping

Packages that use RNATemplateMapping

fr.orsay.lri.varna.models.rna
fr.orsay.lri.varna.models.templates

Uses of RNATemplateMapping in fr.orsay.lri.varna.models.rna

Methods in fr.orsay.lri.varna.models.rna that return RNATemplateMapping

RNATemplateMapping	RNA.drawRNATemplate(RNATemplate template) Same as below, with default helixLengthAdjustmentMethod.
RNATemplateMapping	RNA.drawRNATemplate(RNATemplate template, int helixLengthAdjustmentMethod) Draw this RNA like the given template.

Methods in fr.orsay.lri.varna.models.rna with parameters of type RNATemplateMapping

private void	RNA.computeHelixTranslations(Tree<RNANodeValueTemplate> tree, Map<RNATemplate.RNATemplateHelix,Point2D.Double> translateVectors, RNATemplateMapping mapping, Point2D.Double parentDeltaVector)
private Map<RNATemplate.RNATemplateHelix,Point2D.Double>	RNA.computeHelixTranslations(Tree<RNANodeValueTemplate> tree, RNATemplateMapping mapping)

Uses of RNATemplateMapping in fr.orsay.lri.varna.models.templates

Methods in fr.orsay.lri.varna.models.templates that return RNATemplateMapping

static RNATemplateMapping	RNATemplateAlign.makeTemplateMapping(TreeAlignResult<RNANodeValue2,RNANodeValueTemplate> alignResult, RNA rna) This method takes an alignment between a tree of RNANodeValue2 of RNANodeValue and a tree of RNANodeValue2 of RNANodeValueTemplate, and the original RNA object that was used to create the first tree in the alignment.
static RNATemplateMapping	RNATemplateAlign.mapRNAWithTemplate(RNA rna, RNATemplate template) Map an RNA with an RNATemplate using tree alignment.

Methods in fr.orsay.lri.varna.models.templates with parameters of type RNATemplateMapping

static void

RNATemplateAlign.printMapping(RNATemplateMapping mapping, RNATemplate template, String sequence)