Uses of Class
fr.orsay.lri.varna.models.treealign.TreeAlignResult

Packages that use TreeAlignResult

fr.orsay.lri.varna.models.templates
fr.orsay.lri.varna.models.treealign

Uses of TreeAlignResult in fr.orsay.lri.varna.models.templates

Methods in fr.orsay.lri.varna.models.templates that return TreeAlignResult

static TreeAlignResult<RNANodeValue2,RNANodeValueTemplate>

RNATemplateAlign.alignRNAWithTemplate(RNA rna, RNATemplate template) Align the given RNA with the given RNA template.

Methods in fr.orsay.lri.varna.models.templates with parameters of type TreeAlignResult

static RNATemplateMapping

RNATemplateAlign.makeTemplateMapping(TreeAlignResult<RNANodeValue2,RNANodeValueTemplate> alignResult, RNA rna) This method takes an alignment between a tree of RNANodeValue2 of RNANodeValue and a tree of RNANodeValue2 of RNANodeValueTemplate, and the original RNA object that was used to create the first tree in the alignment.

Uses of TreeAlignResult in fr.orsay.lri.varna.models.treealign

Methods in fr.orsay.lri.varna.models.treealign that return TreeAlignResult

TreeAlignResult<ValueType1,ValueType2>

TreeAlign.align(Tree<ValueType1> T1, Tree<ValueType2> T2) Align T1 with T2, computing both the distance and the alignment.