Uses of Package
fr.orsay.lri.varna.models.treealign

Packages that use fr.orsay.lri.varna.models.treealign

fr.orsay.lri.varna.models.rna
fr.orsay.lri.varna.models.templates
fr.orsay.lri.varna.models.treealign

Classes in fr.orsay.lri.varna.models.treealign used by fr.orsay.lri.varna.models.rna

Tree
An object of this class is a rooted tree, where children are ordered.

Classes in fr.orsay.lri.varna.models.treealign used by fr.orsay.lri.varna.models.templates

GraphvizDrawableNodeValue
A tree can be displayed using graphviz (using class TreeGraphviz) if the node values in the tree implement this interface.

RNANodeValue2
In this model, nodes are either: 1.

Tree
An object of this class is a rooted tree, where children are ordered.

TreeAlignLabelDistanceAsymmetric

TreeAlignResult
The result of aligning a tree T1 with a tree T2.

Classes in fr.orsay.lri.varna.models.treealign used by fr.orsay.lri.varna.models.treealign

AlignedNode
The type of node values in an alignment.

ExampleDistance3

ExampleDistance3.SequenceAlignResult

GraphvizDrawableNodeValue
A tree can be displayed using graphviz (using class TreeGraphviz) if the node values in the tree implement this interface.

RNANodeValue
We use the following convention: If the node is marked by a couple (n,m) these integers are stored in leftBasePosition and rightBasePosition (ie.

RNANodeValue.Origin

RNANodeValue2
In this model, nodes are either: 1.

RNATree2Exception

Tree
An object of this class is a rooted tree, where children are ordered.

TreeAlign.TreeData

TreeAlignException

TreeAlignLabelDistanceAsymmetric

TreeAlignLabelDistanceSymmetric
Same as TreeAlignLabelDistanceAsymmetric, but elements on both trees are of the same type, and the function is symmetric, ie.

TreeAlignResult
The result of aligning a tree T1 with a tree T2.