StatCVS - Directory src/jalview/datamodel/

Lines of Code

src/jalview/datamodel/ Lines of Code

Developers

Author	Changes	Lines of Code	Lines per Change
Totals	743 (100.0%)	27602 (100.0%)	37.1
andrew	379 (51.0%)	13855 (50.2%)	36.5
jprocter	263 (35.4%)	8617 (31.2%)	32.7
jimp	76 (10.2%)	4695 (17.0%)	61.7
amwaterhouse	25 (3.4%)	435 (1.6%)	17.4

Most Recent Commits

jprocter 2010-06-11 08:59

patched for JAL-531 - only display full symbol distribution stats on tooltip/annotation label when the sequenceLogo is displayed.

8 lines of code changed in:

src/jalview/datamodel: SequenceGroup.java (+8 -7)

jprocter 2010-06-08 15:25

Patch for incorrect column selection when hidden regions are present * JAL-558

0 lines of code changed in:

src/jalview/datamodel: ColumnSelection.java (changed)

jprocter 2010-06-06 15:57

patch for JAL-542

7 lines of code changed in:

src/jalview/datamodel: SequenceGroup.java (+7 -7)

jprocter 2010-06-03 16:12

javadoc re JAL-554

1 lines of code changed in:

src/jalview/datamodel: AlignmentI.java (+1 -1)

jprocter 2010-04-30 10:29

jalview 2.5 release banner

792 lines of code changed in:

src/jalview/datamodel: AlignedCodonFrame.java (changed), Alignment.java (+27 -19), AlignmentAnnotation.java (+57 -46), AlignmentI.java (+64 -51), AlignmentOrder.java (+30 -33), AlignmentView.java (changed), Annotation.java (+24 -25), BinaryNode.java (+23 -22), BinarySequence.java (+14 -15), CigarArray.java (changed), CigarBase.java (changed), CigarCigar.java (changed), CigarSimple.java (changed), ColumnSelection.java (changed), DBRefEntry.java (+21 -22), DBRefSource.java (changed), FeatureProperties.java (changed), GraphLine.java (+12 -13), HiddenSequences.java (+12 -13), Mapping.java (+20 -21), NodeTransformI.java (+13 -14), PDBEntry.java (+12 -13), Provenance.java (+12 -13), ProvenanceEntry.java (+12 -13), SearchResults.java (+24 -22), SeqCigar.java (+46 -47), Sequence.java (+44 -43), SequenceFeature.java (+16 -17), SequenceGroup.java (+199 -143), SequenceI.java (+35 -36), SequenceNode.java (+26 -28), SequencePoint.java (+13 -14), UniprotEntry.java (+12 -13), UniprotFile.java (+12 -13), UniprotProteinName.java (changed), UniprotSequence.java (+12 -13)

jprocter 2010-04-29 17:09

make sure references are intact when group annotation is accessed

6 lines of code changed in:

src/jalview/datamodel: SequenceGroup.java (+6 -5)

jprocter 2010-04-29 16:03

isAligned assertion (bug 0008144)

23 lines of code changed in:

src/jalview/datamodel: Alignment.java (+16 -7), AlignmentI.java (+7 -2)

jprocter 2010-04-28 11:15

group/annotation association housekeeping

199 lines of code changed in:

src/jalview/datamodel: Alignment.java (+197 -90), AlignmentAnnotation.java (+2 -1)

jprocter 2010-04-23 16:09

javadoc

6 lines of code changed in:

src/jalview/datamodel: AlignmentAnnotation.java (+6 -6)

jprocter 2010-04-16 17:43

patch for bug #36198 - more to follow on Monday.

5 lines of code changed in:

src/jalview/datamodel: AlignmentAnnotation.java (+5 -4)

jprocter 2010-04-14 15:36

profile visualizations are now logos

9 lines of code changed in:

src/jalview/datamodel: SequenceGroup.java (+9 -9)

jprocter 2010-03-30 18:45

name update for group autoannotation and consensus display settings

58 lines of code changed in:

src/jalview/datamodel: SequenceGroup.java (+58 -17)

jprocter 2010-03-26 12:20

comments

2 lines of code changed in:

src/jalview/datamodel: SequenceGroup.java (+2 -2)

jprocter 2010-03-22 17:14

todo and sensible default setting of min/max for histograms and line graphs to include 0

11 lines of code changed in:

src/jalview/datamodel: AlignmentAnnotation.java (+11 -2)

jprocter 2010-03-11 17:04

individual label format settings for each annotation row. Removed excess term in conditional.

16 lines of code changed in:

src/jalview/datamodel: AlignmentAnnotation.java (+16 -2)

jprocter 2009-11-09 17:03

no Vector(Vector) copy constructor in 1.2

0 lines of code changed in:

src/jalview/datamodel: ColumnSelection.java (changed)

jprocter 2009-11-06 16:29

setting and merging selected columns from another selection object

0 lines of code changed in:

src/jalview/datamodel: ColumnSelection.java (changed)

jprocter 2009-08-21 12:00

basic implementation of profile display and todos

50 lines of code changed in:

src/jalview/datamodel: SequenceGroup.java (+50 -19)

jprocter 2009-08-21 11:58

todo

3 lines of code changed in:

src/jalview/datamodel: AlignmentAnnotation.java (+3 -3)

jprocter 2009-07-24 16:10

implement new insert annotation row method and ensure group annotation rows are removed when groups are removed

36 lines of code changed in:

src/jalview/datamodel: Alignment.java (+36 -11)

(353 more)