Building RNA version '-r Release_2_5_Branch'
/cluster/gjb_lab/NOBACK/fc/ws-dev1/live/cruisecontrol/checkout/rna-jalview/src/jalview/analysis/SequenceIdMatcher.java:232: warning: unmappable character for encoding UTF8
private String WORD_SEP = "~. |#\\/<>!\"�$%^*)}[@',?_";
^
/cluster/gjb_lab/NOBACK/fc/ws-dev1/live/cruisecontrol/checkout/rna-jalview/src/jalview/bin/JalviewLite.java:45: warning: unmappable character for encoding UTF8
* @return String list of selected sequence IDs, each terminated by "�"
^
/cluster/gjb_lab/NOBACK/fc/ws-dev1/live/cruisecontrol/checkout/rna-jalview/src/jalview/bin/JalviewLite.java:57: warning: unmappable character for encoding UTF8
* ("�" as default)
^
/cluster/gjb_lab/NOBACK/fc/ws-dev1/live/cruisecontrol/checkout/rna-jalview/src/jalview/bin/JalviewLite.java:67: warning: unmappable character for encoding UTF8
* @return String list of selected sequence IDs, each terminated by "�"
^
/cluster/gjb_lab/NOBACK/fc/ws-dev1/live/cruisecontrol/checkout/rna-jalview/src/jalview/bin/JalviewLite.java:72: warning: unmappable character for encoding UTF8
return getSelectedSequencesFrom(alf, "�");
^
/cluster/gjb_lab/NOBACK/fc/ws-dev1/live/cruisecontrol/checkout/rna-jalview/src/jalview/bin/JalviewLite.java:81: warning: unmappable character for encoding UTF8
* separator string to use - default is "�"
^
/cluster/gjb_lab/NOBACK/fc/ws-dev1/live/cruisecontrol/checkout/rna-jalview/src/jalview/bin/JalviewLite.java:90: warning: unmappable character for encoding UTF8
sep = "�";
^
/cluster/gjb_lab/NOBACK/fc/ws-dev1/live/cruisecontrol/checkout/rna-jalview/src/jalview/bin/Jalview.java:674: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Class for a varargs call
cast to java.lang.Class[] for a non-varargs call and to suppress this warning
Constructor gbcons = gbindingc.getConstructor(null);
^
/cluster/gjb_lab/NOBACK/fc/ws-dev1/live/cruisecontrol/checkout/rna-jalview/src/jalview/bin/Jalview.java:675: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Object for a varargs call
cast to java.lang.Object[] for a non-varargs call and to suppress this warning
Object gbinding = gbcons.newInstance(null);
^
/cluster/gjb_lab/NOBACK/fc/ws-dev1/live/cruisecontrol/checkout/rna-jalview/src/jalview/gui/Desktop.java:1771: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Class for a varargs call
cast to java.lang.Class[] for a non-varargs call and to suppress this warning
Constructor gccons = gcClass.getConstructor(null);
^
/cluster/gjb_lab/NOBACK/fc/ws-dev1/live/cruisecontrol/checkout/rna-jalview/src/jalview/gui/Desktop.java:1775: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Class for a varargs call
cast to java.lang.Class[] for a non-varargs call and to suppress this warning
java.lang.reflect.Method run = gcClass.getMethod("run", null);
^
/cluster/gjb_lab/NOBACK/fc/ws-dev1/live/cruisecontrol/checkout/rna-jalview/src/jalview/gui/Desktop.java:1776: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Object for a varargs call
cast to java.lang.Object[] for a non-varargs call and to suppress this warning
Object gc = gccons.newInstance(null);
^
/cluster/gjb_lab/NOBACK/fc/ws-dev1/live/cruisecontrol/checkout/rna-jalview/src/jalview/gui/Desktop.java:1779: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Object for a varargs call
cast to java.lang.Object[] for a non-varargs call and to suppress this warning
run.invoke(gc, null);
^
/cluster/gjb_lab/NOBACK/fc/ws-dev1/live/cruisecontrol/checkout/rna-jalview/src/jalview/ws/seqfetcher/ASequenceFetcher.java:239: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Class for a varargs call
cast to java.lang.Class[] for a non-varargs call and to suppress this warning
Object proxyObj = dbSourceProxy.getConstructor(null)
^
/cluster/gjb_lab/NOBACK/fc/ws-dev1/live/cruisecontrol/checkout/rna-jalview/src/jalview/ws/seqfetcher/ASequenceFetcher.java:240: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Object for a varargs call
cast to java.lang.Object[] for a non-varargs call and to suppress this warning
.newInstance(null);
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
15 warnings
IAResourceBundle: create resource bundle: en
IAResourceBundle: create resource bundle: en
IAResourceBundle: create resource bundle: en
IAResourceBundle: create resource bundle: en
IAResourceBundle: create resource bundle: en
__________________________________________________________________________
InstallAnywhere 2010
Version: 11.0
Build: 3890 (Designer/Runtime: Indy)
__________________________________________________________________________
Fri Aug 20 09:26:54 BST 2010
Free Memory: 21953 kB
Total Memory: 25472 kB
4 Command Line Args:
0: -b
1: /cluster/gjb_lab/NOBACK/fc/ws-dev1/live/cruisecontrol/checkout/rna-jalview/utils/InstallAnywhere/Jalview.iap_xml_reloc.iap_xml
2: -p
3: /cluster/gjb_lab/NOBACK/fc/ws-dev1/live/cruisecontrol/iabuild.xml
java.class.path:
/homes/ws-dev1/Macrovision/IA_2010/resource/image_defaults
/homes/ws-dev1/Macrovision/IA_2010/resource
/homes/ws-dev1/Macrovision/IA_2010/resource/compiler.zip
/homes/ws-dev1/Macrovision/IA_2010/IAClasses.zip
/homes/ws-dev1/Macrovision/IA_2010/resource/linking.zip
/homes/ws-dev1/Macrovision/IA_2010/resource/update/update.jar
/homes/ws-dev1/Macrovision/IA_2010/isus/us.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/dim/dim.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/ice/ib6core.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/ice/ib6access.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/ice/ib6extra.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/ice/ib6http.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/ice/ib6https.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/ice/ib6js.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/ice/ib6ntlm.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/ice/ib6swing.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/ice/ib6util.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/ice/ib6xalan.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/ice/icessl.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/ice/ui.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/commons-codec-1.3.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/ibm/os400/jt400Small.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/fnp/flexlm.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/fnp/EccpressoAll.jar
/homes/ws-dev1/Macrovision/IA_2010/lax.jar
ZGUtil.CLASS_PATH:
/homes/ws-dev1/Macrovision/IA_2010/resource/image_defaults
/homes/ws-dev1/Macrovision/IA_2010/resource
/homes/ws-dev1/Macrovision/IA_2010/IAClasses.zip
/homes/ws-dev1/Macrovision/IA_2010/isus/us.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/dim/dim.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/ice/ib6core.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/ice/ib6access.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/ice/ib6extra.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/ice/ib6http.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/ice/ib6https.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/ice/ib6js.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/ice/ib6ntlm.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/ice/ib6util.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/ice/ib6xalan.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/ice/icessl.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/commons-codec-1.3.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/ibm/os400/jt400Small.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/fnp/flexlm.jar
/homes/ws-dev1/Macrovision/IA_2010/resource/fnp/EccpressoAll.jar
sun.boot.class.path:
/homes/ws-dev1/Macrovision/IA_2010/jre/lib/resources.jar
/homes/ws-dev1/Macrovision/IA_2010/jre/lib/rt.jar
/homes/ws-dev1/Macrovision/IA_2010/jre/lib/sunrsasign.jar
/homes/ws-dev1/Macrovision/IA_2010/jre/lib/jsse.jar
/homes/ws-dev1/Macrovision/IA_2010/jre/lib/jce.jar
/homes/ws-dev1/Macrovision/IA_2010/jre/lib/charsets.jar
/homes/ws-dev1/Macrovision/IA_2010/jre/classes
java.ext.dirs:
/homes/ws-dev1/Macrovision/IA_2010/jre/lib/ext
/usr/java/packages/lib/ext
java.version == 1.6.0_15 (Java 1)
java.vm.name == Java HotSpot(TM) Server VM
java.vm.vendor == Sun Microsystems Inc.
java.vm.version == 14.1-b02
java.vm.specification.name == Java Virtual Machine Specification
java.vm.specification.vendor == Sun Microsystems Inc.
java.vm.specification.version == 1.0
java.specification.name == Java Platform API Specification
java.specification.vendor == Sun Microsystems Inc.
java.specification.version == 1.6
java.vendor == Sun Microsystems Inc.
java.vendor.url == http://java.sun.com/
java.class.version == 50.0
java.compiler == null
java.home == /homes/ws-dev1/Macrovision/IA_2010/jre
java.io.tmpdir == /tmp
os.name == Linux
os.arch == i386
os.version == 2.6.18-92.1.22.el5
path.separator == :
file.separator == /
file.encoding == UTF-8
user.name == ws-dev1
user.home == /homes/ws-dev1
user.dir == /homes/ws-dev1/Macrovision/IA_2010
user.language == en
user.region == null
__________________________________________________________________________
No VM Pack files exist in this directory
BuildInstaller: Asked to load /cluster/gjb_lab/NOBACK/fc/ws-dev1/live/cruisecontrol/NOBACK/checkout/rna-jalview/utils/InstallAnywhere/Jalview.iap_xml_reloc.iap_xml
Copying /cluster/gjb_lab/NOBACK/fc/ws-dev1/live/cruisecontrol/NOBACK/checkout/rna-jalview/utils/InstallAnywhere/Jalview.iap_xml_relocBuild.iap_xml. Using copy for build.
Original project unchanged
Using /cluster/gjb_lab/NOBACK/fc/ws-dev1/live/cruisecontrol/NOBACK/checkout/rna-jalview/utils/InstallAnywhere/Jalview.iap_xml_relocBuild.iap_xml for console build option
BuildInstaller: Loading external build settings file: /cluster/gjb_lab/NOBACK/fc/ws-dev1/live/cruisecontrol/iabuild.xml
Building Installer...
Build Configuration Name: Migrated_Configuration
Selected Build Targets: MacOSX Windows Windows+VM AIX AIX+VM HPUX HPUX+VM Linux Linux+VM Solaris Solaris+VM GenericUnix UNIX_with_VM+VM Java
Active Build Options: Web
InstallAnywhere temporary directory is located at:: /cluster/gjb_lab/NOBACK/fc/ws-dev1/live/cruisecontrol/NOBACK/checkout/rna-jalview/utils/InstallAnywhere/.buildinstaller1.tmp
System's temporary directory = /tmp
Creating build directories...
[ 2010-08-20 09:26:57 ] BUILD STARTING
Preparing to build......
Generating build output for the build of "Jalview"
The project file being built is located at "/cluster/gjb_lab/NOBACK/fc/ws-dev1/live/cruisecontrol/NOBACK/checkout/rna-jalview/utils/InstallAnywhere/Jalview.iap_xml_reloc.iap_xml"
Generating the Build for Configuration "Migrated Configuration"
InstallAnywhere temporary directory is located at:: /cluster/gjb_lab/NOBACK/fc/ws-dev1/live/cruisecontrol/NOBACK/checkout/rna-jalview/utils/InstallAnywhere/.buildinstaller1.tmp
Checking free disk space...
Saving project...
Updating project pieces...
Generating script...
Populating labels...
Cleaning unassigned components from project...
XMLScriptWriter: No Installation Objects were skipped
Processing external properties...
Saving external properties...
ExternalPropertySaver.loadPropertiesIfNeeded(): locale file...
.../cluster/gjb_lab/NOBACK/fc/ws-dev1/live/cruisecontrol/NOBACK/checkout/rna-jalview/utils/InstallAnywhere/Jalview.iap_xml_reloclocales_Migrated_Configuration/custom_en does not exist and will be created.
Cleaning up...
XMLScriptWriter: No Installation Objects were skipped
Processing external properties...
Saving external properties...
Optimizing installer actions...
Finished optimizing by action
Copying common files...
Finished copying common files
Assembling common resources...
Assembling installer components...
(ELAPSED TIME): 0.264 seconds.
uninstallerResources not valid zip. May have had no entries, so will not be bundled.
invalid entry crc-32 (expected 0xaebefa53 but got 0x0)
(ELAPSED TIME): 1.004 seconds.
Finished assembling installer components
Building MacOSX (No VM) web installer...
The MacOSX (No VM) web installer is located at:
/homes/ws-dev1/public_html/jalview/rna/InstallAnywhere/Web_Installers/InstData/MacOSX/install.zip
Building Windows (No VM) web installer...
The Windows (No VM) web installer is located at:
/homes/ws-dev1/public_html/jalview/rna/InstallAnywhere/Web_Installers/InstData/Windows/NoVM/install.exe
Building Windows (VM) web installer...
The Windows (VM) web installer is located at:
/homes/ws-dev1/public_html/jalview/rna/InstallAnywhere/Web_Installers/InstData/Windows/VM/install.exe
Building Unix archive (No VM) web installer...
Building AIX (No VM) web installer...
Using the VM list in the build settings
The AIX (No VM) web installer is located at:
/homes/ws-dev1/public_html/jalview/rna/InstallAnywhere/Web_Installers/InstData/AIX/NoVM/install.bin
Building AIX (VM) web installer...
Using the VM list in the build settings
The AIX (VM) web installer is located at:
/homes/ws-dev1/public_html/jalview/rna/InstallAnywhere/Web_Installers/InstData/AIX/VM/install.bin
Building HPUX (No VM) web installer...
Using the VM list in the build settings
The HPUX (No VM) web installer is located at:
/homes/ws-dev1/public_html/jalview/rna/InstallAnywhere/Web_Installers/InstData/HPUX/NoVM/install.bin
Building HPUX (VM) web installer...
Using the VM list in the build settings
The HPUX (VM) web installer is located at:
/homes/ws-dev1/public_html/jalview/rna/InstallAnywhere/Web_Installers/InstData/HPUX/VM/install.bin
Building Linux (No VM) web installer...
Using the VM list in the build settings
The Linux (No VM) web installer is located at:
/homes/ws-dev1/public_html/jalview/rna/InstallAnywhere/Web_Installers/InstData/Linux/NoVM/install.bin
Building Linux (VM) web installer...
Using the VM list in the build settings
The Linux (VM) web installer is located at:
/homes/ws-dev1/public_html/jalview/rna/InstallAnywhere/Web_Installers/InstData/Linux/VM/install.bin
Building Solaris (No VM) web installer...
Using the VM list in the build settings
The Solaris (No VM) web installer is located at:
/homes/ws-dev1/public_html/jalview/rna/InstallAnywhere/Web_Installers/InstData/Solaris/NoVM/install.bin
Building Solaris (VM) web installer...
Using the VM list in the build settings
The Solaris (VM) web installer is located at:
/homes/ws-dev1/public_html/jalview/rna/InstallAnywhere/Web_Installers/InstData/Solaris/VM/install.bin
Building GenericUnix (No VM) web installer...
Using the VM list in the build settings
The GenericUnix (No VM) web installer is located at:
/homes/ws-dev1/public_html/jalview/rna/InstallAnywhere/Web_Installers/InstData/GenericUnix/install.bin
Building UNIX_with_VM (VM) web installer...
Using the VM list in the build settings
The UNIX_with_VM (VM) web installer is located at:
/homes/ws-dev1/public_html/jalview/rna/InstallAnywhere/Web_Installers/InstData/UNIX_with_VM/VM/install.bin
Building Java archive (No VM) web installer...
The Pure Java web installer is located at:
/homes/ws-dev1/public_html/jalview/rna/InstallAnywhere/Web_Installers/InstData/Java/install.jar
Building web page for installer applet...
Finished building webapplet.
Build process finished.
Build time breakdown:
Build Time breakDown for Configuration :Migrated Configuration
Compile and copy: 1 s, 986 ms
Updating project pieces: 24 ms
Writing project to file: 1 s, 196 ms
Optimize by platform: 3 s, 617 ms
Copying common files: 188 ms
Copying platform specific files: 162 ms
Building common zip: 5 s, 538 ms
Zipping custom code: 1 s, 514 ms
Zipping installer: 2 s, 694 ms
Adding Custom Code: 1 s, 210 ms
Adding other resources: 1 ms
Adding i18n resources: 30 ms
MacOSX -VM: web 2 s, 127 ms
Windows -VM: web 2 s, 466 ms
Windows +VM: web 14 s, 115 ms
Unix archive : web 2 s, 130 ms
AIX -VM: web 352 ms
AIX +VM: web 1 s, 851 ms
HPUX -VM: web 343 ms
HPUX +VM: web 2 s, 661 ms
Linux -VM: web 267 ms
Linux +VM: web 2 s, 142 ms
Solaris -VM: web 259 ms
Solaris +VM: web 2 s, 347 ms
GenericUnix -VM: web 250 ms
UNIX_with_VM +VM: web 2 s, 34 ms
Java archive : web 4 s, 104 ms
Web applet : 839 ms
Time taken for this Build Configuration : 54 s, 145 ms
===========================================================
Total build time: 54 s, 151 ms
===========================================================
Build completed
BUILD ENDING @ 8/20/10 9:27:53 AM
================================================================================
Status for the build of "Jalview"
The installer script was successfully written to disk.
No errors were reported to the build log
Platform status:
Mac OS (No VM) Web - Status: SUCCESS
Win32 (No VM) Web - Status: SUCCESS
Win32 (VM) Web - Status: SUCCESS
AIX (No VM) Web - Status: SUCCESS
AIX (VM) Web - Status: SUCCESS
HP-UX (No VM) Web - Status: SUCCESS
HP-UX (No VM) Web - Status: SUCCESS
Linux (No VM) Web - Status: SUCCESS
Linux (VM) Web - Status: SUCCESS
Solaris (No VM) Web - Status: SUCCESS
Solaris (VM) Web - Status: SUCCESS
Generic Unix (No VM) Web - Status: SUCCESS
Other (VM) Web - Status: SUCCESS
Pure Java Web - Status: SUCCESS
THE BUILD WAS A SUCCESS
================================================================================
null
Closed.
EXITING: 0
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