The Barton Group
Scanps Search
Protein sequence database searching using
Scanps
Your Email address:
Search title:
Enter a protein sequence in FASTA format or as raw sequence:
or upload a sequence from file:
Database
:
pdb (PDB sequences )
scop100 (SCOP release 1.71 sequences with less than 100% sequence identity to each other )
uniref50 (Uniref sequences with less than 50% pairwise sequence identity )
uniref90 (Uniref sequences with less than 90% pairwise sequence identity )
E-value:
Profile E-value
Matrix
BLOSUM35
BLOSUM50
BLOSUM62
PAM30
PAM100
PAM250
Iterations
1
2
3
4
5
6
7
8
9
10
Mode
standard
affine
Gap open penalty
Gap extension penalty
Allow multiple hits
Use E-value cutoff for printing pairwise alignments
Maximum number of pairwise alignments to output:
Print freq Table
Print profile
Raw output (no HTML formatting)
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