JABAWS Service Status

This servlet tests if the web services are healthy on the tomcat instance on which JABAWS is deployed.
If the tomcat instance is mapped to another "proxy" web server, the servlet does not test availability of
the web services at the endpoints of this external web server.
Click on the service status to see the results of the testing.
Server: http://www.compbio.dundee.ac.uk:80/jabaws
Time of execution: 15 sec
Service Status as of: 28/04/2024 21:16:53 (Refreshes every 10 minutes)
Refresh Service Status

Alignment Web Services

Service	Version	Status	Reference and more details
MafftWS	7.310	OK Checking service MafftWS Testing alignment with default parameters: Querying job status...OK Retrieving results...OK Testing alignment with presets: Querying presets...OK Querying Parameters...OK Querying Limits...OK Querying Local Engine Limits...OK Check is completed. The Service MafftWS IS WORKING	INFO REFERENCE: Katoh K, Toh H, "Parallelization of the MAFFT multiple sequence alignment program" Bioinformatics 26:1899 (2010) MORE INFORMATION: http://mafft.cbrc.jp/alignment/software/
MuscleWS	3.8.31	OK Checking service MuscleWS Testing alignment with default parameters: Querying job status...OK Retrieving results...OK Testing alignment with presets: Querying presets...OK Querying Parameters...OK Querying Limits...OK Querying Local Engine Limits...OK Check is completed. The Service MuscleWS IS WORKING	INFO REFERENCE: Edgar RC, "MUSCLE: multiple sequence alignment with high accuracy and high throughput" Nucleic Acids Res. 32(5):1792 (2004) MORE INFORMATION: http://www.drive5.com/muscle/
ClustalWS	2.1	OK Checking service ClustalWS Testing alignment with default parameters: Querying job status...OK Retrieving results...OK Testing alignment with presets: Querying presets...OK Querying Parameters...OK Querying Limits...OK Querying Local Engine Limits...OK Check is completed. The Service ClustalWS IS WORKING	INFO REFERENCE: Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG, "Clustal W and Clustal X version 2.0" Bioinformatics, 23: 2947 (2007) MORE INFORMATION: http://www.clustal.org/clustal2/
ClustalOWS	1.2.4	OK Checking service ClustalOWS Testing alignment with default parameters: Querying job status...OK Retrieving results...OK Querying presets...UNSUPPORTED Querying Parameters...OK Querying Limits...OK Querying Local Engine Limits...OK Check is completed. The Service ClustalOWS IS WORKING	INFO REFERENCE: Sievers F, Wilm A, Dineen D, Gibson TJ, Karplus K, Li W, Lopez R, McWilliam H, Remmert M, Söding J, Thompson JD, Higgins DG, "Fast, scalable generation of high quality protein multiple sequence alignments using Clustal Omega" Mol Syst Biol. 7:539 (2011) MORE INFORMATION: http://www.clustal.org/omega/
TcoffeeWS	11.00.8cbe486	OK Checking service TcoffeeWS Testing alignment with default parameters: Querying job status...OK Retrieving results...OK Testing alignment with presets: Querying presets...OK Querying Parameters...OK Querying Limits...OK Querying Local Engine Limits...OK Check is completed. The Service TcoffeeWS IS WORKING	INFO REFERENCE: Notredame C, Higgins DG, Heringa L, "T-Coffee: A novel method for multiple sequence alignments" JMB, 302(1):205 (2000) MORE INFORMATION: http://tcoffee.crg.cat/apps/tcoffee/index.html
ProbconsWS	1.12	OK Checking service ProbconsWS Testing alignment with default parameters: Querying job status...OK Retrieving results...OK Querying presets...UNSUPPORTED Querying Parameters...OK Querying Limits...OK Querying Local Engine Limits...OK Check is completed. The Service ProbconsWS IS WORKING	INFO REFERENCE: Do CB, Mahabhashyam MSP, Brudno M, and Batzoglou S, "PROBCONS: Probabilistic Consistency-based Multiple Sequence Alignment" Genome Research 15:330 (2005) MORE INFORMATION: http://probcons.stanford.edu/
MSAprobsWS	0.9.7	OK Checking service MSAprobsWS Testing alignment with default parameters: Querying job status...OK Retrieving results...OK Querying presets...UNSUPPORTED Querying Parameters...OK Querying Limits...OK Querying Local Engine Limits...OK Check is completed. The Service MSAprobsWS IS WORKING	INFO REFERENCE: Liu Y, Schmidt B, and Maskell DL, "MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities" Bioinformatics, 26 (16):1958 (2010) MORE INFORMATION: http://msaprobs.sourceforge.net/
GLprobsWS	1.0	OK Checking service GLprobsWS Testing alignment with default parameters: Querying job status...OK Retrieving results...OK Querying presets...UNSUPPORTED Querying Parameters...OK Querying Limits...OK Querying Local Engine Limits...OK Check is completed. The Service GLprobsWS IS WORKING	INFO REFERENCE: Yongtao Ye, Siu-Ming Yiu, David W. Cheung, Qing Zhan, Hing-Fung Ting, Yadong Wang, Tak-Wah Lam, "GLProbs: Aligning multiple sequences adaptively" in progress (2013) MORE INFORMATION: http://sourceforge.net/projects/glprobs/

Disorder Web Services

Service	Version	Status	Reference and more details
JronnWS	1.0	OK Checking service JronnWS Calling annotation test.........OK Querying presets...UNSUPPORTED Querying Parameters...UNSUPPORTED Querying Limits...OK Querying Local Engine Limits...OK Check is completed. The Service JronnWS IS WORKING	INFO REFERENCE: unpublished, original algorithm Yang ZR, Thomson R, McMeil P, and Esnouf RM, "RONN: the bio-basis function neural network technique applied to the dectection of natively disordered regions in proteins" Bioinformatics 21:3369 (2005) MORE INFORMATION: http://www.compbio.dundee.ac.uk/jabaws/
DisemblWS	1.5	OK Checking service DisemblWS Calling annotation test.........OK Querying presets...UNSUPPORTED Querying Parameters...UNSUPPORTED Querying Limits...OK Querying Local Engine Limits...OK Check is completed. The Service DisemblWS IS WORKING	INFO REFERENCE: Linding R, Jensen LJ, Diella F, Bork P, Gibson TJ, and Russell RB, "Protein disorder prediction: implications for structural proteomics" Structure 11(11):1453 (2003) MORE INFORMATION: http://dis.embl.de/
GlobPlotWS	2.3	OK Checking service GlobPlotWS Calling annotation test.........OK Querying presets...UNSUPPORTED Querying Parameters...UNSUPPORTED Querying Limits...OK Querying Local Engine Limits...OK Check is completed. The Service GlobPlotWS IS WORKING	INFO REFERENCE: Linding R, Russell RB, Neduva V and Gibson TJ, GlobPlot: exploring protein sequences for globularity and disorder Nucl. Acids Res. 31 (13):3701 (2003) MORE INFORMATION: http://globplot.embl.de/
IUPredWS	1.0	OK Checking service IUPredWS Calling annotation test.........OK Querying presets...UNSUPPORTED Querying Parameters...OK Querying Limits...OK Querying Local Engine Limits...OK Check is completed. The Service IUPredWS IS WORKING	INFO REFERENCE: Dosztányi Z, Csizmók V, Tompa P, and Simon I, "The Pairwise Energy Content Estimated from Amino Acid Composition Discriminates between Folded and Intrinsically Unstructured Proteins" J. Mol. Biol. 347:827 (2005) MORE INFORMATION: http://iupred.enzim.hu/

Other Web Services

Service	Version	Status	Reference and more details
AAConWS	1.1	OK Checking service AAConWS Calling annotation test.........OK Calling analyse with Preset.........OK Querying presets...OK Querying Parameters...OK Querying Limits...OK Querying Local Engine Limits...OK Check is completed. The Service AAConWS IS WORKING	INFO REFERENCE: Peter V. Troshin, Agnieszka Golicz, David M. A. Martin, Fábio Madeira, James B. Procter and Geoffrey J. Barton "AACon: A Fast Amino Acid Conservation Calculation Service" (2017) Paper in preparation. MORE INFORMATION: http://www.compbio.dundee.ac.uk/aacon
RNAalifoldWS	2.1.2	OK Checking service RNAalifoldWS Calling annotation test.........OK Querying presets...UNSUPPORTED Querying Parameters...OK Querying Limits...OK Querying Local Engine Limits...OK Check is completed. The Service RNAalifoldWS IS WORKING	INFO REFERENCE: Hofacker IL, Fekete M, and Stadler PV, "Secondary Structure Prediction for Aligned RNA Sequences" J.Mol.Biol. 319:1059 (2002) and Bernhart SH, Hofacker IL Will S, Gruber AR, and Stadler PF, "RNAalifold: Improved consensus structure prediction for RNA alignments" BMC Bioinformatics, 9:474 (2008) MORE INFORMATION: http://www.tbi.univie.ac.at/RNA/

Service

Version

Status

Reference and more details

AAConWS

1.1

Checking service AAConWS
Calling annotation test.........OK
Calling analyse with Preset.........OK
Querying presets...OK
Querying Parameters...OK
Querying Limits...OK
Querying Local Engine Limits...OK
Check is completed. The Service AAConWS IS WORKING

REFERENCE: Peter V. Troshin, Agnieszka Golicz, David M. A. Martin, Fábio Madeira, James B. Procter and Geoffrey J. Barton
"AACon: A Fast Amino Acid Conservation Calculation Service"
(2017) Paper in preparation.

MORE INFORMATION: http://www.compbio.dundee.ac.uk/aacon

RNAalifoldWS

2.1.2

Checking service RNAalifoldWS
Calling annotation test.........OK
Querying presets...UNSUPPORTED
Querying Parameters...OK
Querying Limits...OK
Querying Local Engine Limits...OK
Check is completed. The Service RNAalifoldWS IS WORKING

REFERENCE: Hofacker IL, Fekete M, and Stadler PV,
"Secondary Structure Prediction for Aligned RNA Sequences"
J.Mol.Biol. 319:1059 (2002) and
 Bernhart SH, Hofacker IL Will S, Gruber AR, and Stadler PF,
"RNAalifold: Improved consensus structure prediction for RNA alignments"
BMC Bioinformatics, 9:474 (2008)


MORE INFORMATION: http://www.tbi.univie.ac.at/RNA/

If you would like to integrate JABAWS with automated health check system you may want to use the HTTP code response service checker. It responds with HTTP status code depending on the status of the web service. For more information please refer to Testing JABAWS server help page.