SILENT_MODE
BLOCK_FILE jp_6VX6dfa.concise.blc
MAX_NSEQ 877
MAX_INPUT_LEN 879
OUTPUT_FILE jp_6VX6dfa.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 116 866   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 867 116 876 H SPACE
SUB_CHARS 1 867 116 876 E SPACE
SUB_CHARS 1 867 116 876 - SPACE
STRAND 3 870 5
COLOUR_TEXT_REGION 3 870 5 870 51
STRAND 10 870 13
COLOUR_TEXT_REGION 10 870 13 870 51
STRAND 18 870 25
COLOUR_TEXT_REGION 18 870 25 870 51
STRAND 34 870 39
COLOUR_TEXT_REGION 34 870 39 870 51
STRAND 46 870 51
COLOUR_TEXT_REGION 46 870 51 870 51
STRAND 63 870 67
COLOUR_TEXT_REGION 63 870 67 870 51
STRAND 73 870 78
COLOUR_TEXT_REGION 73 870 78 870 51
STRAND 87 870 94
COLOUR_TEXT_REGION 87 870 94 870 51
STRAND 101 870 103
COLOUR_TEXT_REGION 101 870 103 870 51
STRAND 108 870 112
COLOUR_TEXT_REGION 108 870 112 870 51
STRAND 3 875 5
COLOUR_TEXT_REGION 3 875 5 875 51
STRAND 10 875 12
COLOUR_TEXT_REGION 10 875 12 875 51
STRAND 18 875 25
COLOUR_TEXT_REGION 18 875 25 875 51
STRAND 34 875 39
COLOUR_TEXT_REGION 34 875 39 875 51
STRAND 46 875 51
COLOUR_TEXT_REGION 46 875 51 875 51
STRAND 64 875 67
COLOUR_TEXT_REGION 64 875 67 875 51
STRAND 73 875 78
COLOUR_TEXT_REGION 73 875 78 875 51
STRAND 87 875 95
COLOUR_TEXT_REGION 87 875 95 875 51
STRAND 101 875 103
COLOUR_TEXT_REGION 101 875 103 875 51
STRAND 107 875 112
COLOUR_TEXT_REGION 107 875 112 875 51
STRAND 3 876 5
COLOUR_TEXT_REGION 3 876 5 876 51
STRAND 10 876 13
COLOUR_TEXT_REGION 10 876 13 876 51
STRAND 18 876 24
COLOUR_TEXT_REGION 18 876 24 876 51
STRAND 34 876 39
COLOUR_TEXT_REGION 34 876 39 876 51
STRAND 47 876 51
COLOUR_TEXT_REGION 47 876 51 876 51
STRAND 62 876 67
COLOUR_TEXT_REGION 62 876 67 876 51
STRAND 73 876 78
COLOUR_TEXT_REGION 73 876 78 876 51
STRAND 87 876 93
COLOUR_TEXT_REGION 87 876 93 876 51
STRAND 100 876 103
COLOUR_TEXT_REGION 100 876 103 876 51
STRAND 108 876 112
COLOUR_TEXT_REGION 108 876 112 876 51