Input file

Anchor optimisation enabledisable

Profile scoring method defaultlespsv

Sequence type autoproteindnarna

Maxiters

Diagonal break

Diagonal length

Diagonal margin

Anchor spacing

Matrix blosum100blosum30blosum35blosum40blosum45blosum50blosum55blosum60blosum62blosum65blosum70blosum75blosum80blosum85blosum90blosumndayhoffgonnetidentitymatchnuc.4.2nuc.4.4pam10pam100pam110pam120pam130pam140pam150pam160pam170pam180pam190pam20pam200pam210pam220pam230pam240pam250pam260pam270pam280pam290pam30pam300pam310pam320pam330pam340pam350pam360pam370pam380pam390pam40pam400pam410pam420pam430pam440pam450pam460pam470pam480pam490pam50pam500pam60pam70pam80pam90

Gap open penalty

Gap extension penalty

Center

Hydro

Hydrofactor

Minimum anchor score

Minimum smoothed anchor score

Cluster1 upgma

Cluster2 upgmbneighborjoining

Sequence weighting scheme 1 nonehenikoffhenikoffpbgscclustalwthreeway

Sequence weighting scheme 2 nonehenikoffhenikoffpbgscclustalwthreeway

Distance1 kmer6_6kmer20_3kbit20_3kmer20_4kmer4_6