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input sequence file

Search sequences in PDB

Preset Mode

Distance matrix computation method

Tree Computation method

Number of diagonals used by the fasta_pair_wise algorithm

Number of diagonals used by the fasta pair-wise algorithm

Diagonal threshold

Alphabet degeneration method

Substitution Matrix

Match penalty

Gap opening penalty

Gap extension penalty

Cosmetic penalty

Terminal gaps penalty

Number of iterations

Output order

Input order