3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 2.824

Ascend tree (bring in more domains)

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Classes% of representative set
undefined 18.75
All alpha 81.25
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 18.75 0.94
All alpha
4-helical cytokines from SCOP 31.25 4.93
4-helical cytokines Short chain from 3Dee 3.12 0.49
Apolipophorin-III from SCOP 3.12 0.49
Ferritin like from 3Dee 9.38 1.48
Four-helical up-and-down bundle from SCOP 31.25 4.93
Transducin (alpha subunit), insertion domain from SCOP 3.12 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1aep-1 [seq. related domains] All alpha Apolipophorin-III
1hr3a-1 [seq. related domains] All alpha Four-helical up-and-down bundle
256ba-1 [seq. related domains] All alpha Four-helical up-and-down bundle
1hr3b-1 [seq. related domains] All alpha Four-helical up-and-down bundle
1vls-1 [seq. related domains] All alpha Four-helical up-and-down bundle
1nfo-1 [seq. related domains] All alpha Four-helical up-and-down bundle
1hr3c-1 [seq. related domains] All alpha Four-helical up-and-down bundle
1eged-3 [seq. related domains] All alpha Four-helical up-and-down bundle
1jafb-1 [seq. related domains] All alpha Four-helical up-and-down bundle
1knyb-2 [seq. related domains] All alpha Four-helical up-and-down bundle
1hmdb-1 [seq. related domains] All alpha Four-helical up-and-down bundle
1as3-2 [seq. related domains] All alpha Transducin (alpha subunit), insertion domain
1agrh-1 [seq. related domains] undefined undefined
2a0b-1 [seq. related domains] undefined undefined
1nsgb-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

2il6-1 [seq. related domains] All alpha 4-helical cytokines
1hmcb-1 [seq. related domains] All alpha 4-helical cytokines
1hik-1 [seq. related domains] All alpha 4-helical cytokines
1hwga-1 [seq. related domains] All alpha 4-helical cytokines
1au1b-1 [seq. related domains] All alpha 4-helical cytokines
1irl-1 [seq. related domains] All alpha 4-helical cytokines
1rhgc-1 [seq. related domains] All alpha 4-helical cytokines
2gmfb-1 [seq. related domains] All alpha 4-helical cytokines
1lki-1 [seq. related domains] All alpha 4-helical cytokines
1cnt4-1 [seq. related domains] All alpha 4-helical cytokines
1hulb-2 [seq. related domains] All alpha 4-helical cytokines Short chain
1ryt-1 [seq. related domains] All alpha Ferritin like
1bfrx-1 [seq. related domains] All alpha Ferritin like
2fha-1 [seq. related domains] All alpha Ferritin like
1jli-1 [seq. related domains] undefined undefined
1higb-2 [seq. related domains] undefined undefined
1gtoc-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

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