3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 2.286

Ascend tree (bring in more domains)

Classes% of representative set
undefined 55.56
Alpha and beta (a+b) 11.11
All alpha 33.33
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 55.56 0.79
Alpha and beta (a+b)
The intermediate domain of GroEL from 3Dee 11.11 0.52
All alpha
Anticodon-binding (C-terminal) domain of glutamyl-tRNA Domain II from 3Dee 11.11 0.49
DNA polymerase beta, N-terminal (8 kD)-domain from 3Dee 11.11 0.49
Endonuclease III from 3Dee 11.11 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1gln-4 [seq. related domains] All alpha Anticodon-binding (C-terminal) domain of glutamyl-tRNA Domain II
1aonn-2 [seq. related domains] Alpha and beta (a+b) The intermediate domain of GroEL
1ezd-2 [seq. related domains] undefined undefined
1gnd-2 [seq. related domains] undefined undefined
1abv-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1bnp-1 [seq. related domains] All alpha DNA polymerase beta, N-terminal (8 kD)-domain
2abk-2 [seq. related domains] All alpha Endonuclease III
2ppsl-1 [seq. related domains] undefined undefined
1ytfc-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

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