3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 2.024

Ascend tree (bring in more domains)

Classes% of representative set
undefined 53.85
Alpha and beta (a+b) 7.69
All alpha 38.46
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 53.85 1.10
Alpha and beta (a+b)
The intermediate domain of GroEL from 3Dee 7.69 0.52
All alpha
Anticodon-binding (C-terminal) domain of glutamyl-tRNA Domain II from 3Dee 7.69 0.49
DNA polymerase beta, N-terminal (8 kD)-domain from 3Dee 7.69 0.49
Endonuclease III from 3Dee 7.69 0.49
Retroviral matrix proteins from SCOP 7.69 0.49
Winged DNA binding like from 3Dee 7.69 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1gln-4 [seq. related domains] All alpha Anticodon-binding (C-terminal) domain of glutamyl-tRNA Domain II
1bnp-1 [seq. related domains] All alpha DNA polymerase beta, N-terminal (8 kD)-domain
2abk-2 [seq. related domains] All alpha Endonuclease III
1aonn-2 [seq. related domains] Alpha and beta (a+b) The intermediate domain of GroEL
1abv-1 [seq. related domains] undefined undefined
2ppsl-1 [seq. related domains] undefined undefined
1ezd-2 [seq. related domains] undefined undefined
1gnd-2 [seq. related domains] undefined undefined
1ytfc-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1hiws-1 [seq. related domains] All alpha Retroviral matrix proteins
1ecl-4 [seq. related domains] All alpha Winged DNA binding like
1bax-1 [seq. related domains] undefined undefined
1a0p-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

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