3 Dee - Database of Protein Domain Definitions

[Search] [HELP]

The current cluster is formed at a score of 1.176

Ascend tree (bring in more domains)

Go to (document sections)

Classes% of representative set
undefined 53.70
Alpha and beta (a/b) 5.56
Alpha and beta (a+b) 3.70
All alpha 37.04
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 53.70 4.56
Alpha and beta (a/b)
DNA-binding winged domain from 3Dee 3.70 0.73
DNA/RNA polymerases Domain III from 3Dee 1.85 0.36
Alpha and beta (a+b)
The intermediate domain of GroEL from 3Dee 1.85 0.52
Urease, gamma-subunit from SCOP 1.85 0.52
All alpha
Annexin Domain from 3Dee 3.70 0.99
Anticodon-binding (C-terminal) domain of glutamyl-tRNA Domain II from 3Dee 1.85 0.49
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin from SCOP 5.56 1.48
DNA polymerase beta, N-terminal (8 kD)-domain from 3Dee 1.85 0.49
DNA-binding 3-helical bundle from 3Dee 9.26 2.46
EF-hand from 3Dee 3.70 0.99
Endonuclease III from 3Dee 1.85 0.49
Retroviral matrix proteins from SCOP 1.85 0.49
Thymidine phosphorylase Domain I from 3Dee 1.85 0.49
Trp repressor from SCOP 1.85 0.49
Uteroglobin-like from SCOP 1.85 0.49
Winged DNA binding like from 3Dee 1.85 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1aeif-2 [seq. related domains] All alpha Annexin Domain
1aeif-3 [seq. related domains] All alpha Annexin Domain
1hyp-1 [seq. related domains] All alpha Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
1jtb-1 [seq. related domains] All alpha Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
1hssd-1 [seq. related domains] All alpha Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
1bib-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
1hstb-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
1leb-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
2dtr-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
2cgpc-2 [seq. related domains] All alpha DNA-binding 3-helical bundle
3hsf-1 [seq. related domains] Alpha and beta (a/b) DNA-binding winged domain
1awca-1 [seq. related domains] Alpha and beta (a/b) DNA-binding winged domain
1ktq-4 [seq. related domains] Alpha and beta (a/b) DNA/RNA polymerases Domain III
2mysa-4 [seq. related domains] All alpha EF-hand
1wdca-2 [seq. related domains] All alpha EF-hand
1tpt-1 [seq. related domains] All alpha Thymidine phosphorylase Domain I
1jhga-1 [seq. related domains] All alpha Trp repressor
1a5oa-1 [seq. related domains] Alpha and beta (a+b) Urease, gamma-subunit
1utrb-1 [seq. related domains] All alpha Uteroglobin-like
1ns1b-1 [seq. related domains] undefined undefined
1ignb-2 [seq. related domains] undefined undefined
1pnbb-1 [seq. related domains] undefined undefined
1vhrb-1 [seq. related domains] undefined undefined
1aoy-1 [seq. related domains] undefined undefined
1gtpc-3 [seq. related domains] undefined undefined
2hfh-1 [seq. related domains] undefined undefined
1occu-1 [seq. related domains] undefined undefined
1if1b-1 [seq. related domains] undefined undefined
2fokb-3 [seq. related domains] undefined undefined
1sfe-2 [seq. related domains] undefined undefined
1opc-1 [seq. related domains] undefined undefined
2ezl-1 [seq. related domains] undefined undefined
1foy-1 [seq. related domains] undefined undefined
1iba-1 [seq. related domains] undefined undefined
1al04-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1gln-4 [seq. related domains] All alpha Anticodon-binding (C-terminal) domain of glutamyl-tRNA Domain II
1bnp-1 [seq. related domains] All alpha DNA polymerase beta, N-terminal (8 kD)-domain
2abk-2 [seq. related domains] All alpha Endonuclease III
1hiws-1 [seq. related domains] All alpha Retroviral matrix proteins
1aonn-2 [seq. related domains] Alpha and beta (a+b) The intermediate domain of GroEL
1ecl-4 [seq. related domains] All alpha Winged DNA binding like
1aisb-2 [seq. related domains] undefined undefined
1bax-1 [seq. related domains] undefined undefined
1jsub-1 [seq. related domains] undefined undefined
1jkw-1 [seq. related domains] undefined undefined
1a0p-1 [seq. related domains] undefined undefined
1abv-1 [seq. related domains] undefined undefined
2ppsl-1 [seq. related domains] undefined undefined
1ezd-2 [seq. related domains] undefined undefined
1gnd-2 [seq. related domains] undefined undefined
2fusb-1 [seq. related domains] undefined undefined
1ytfc-1 [seq. related domains] undefined undefined
1jkw-2 [seq. related domains] undefined undefined
1jsub-2 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

3dee@compbio.dundee.ac.uk