3 Dee - Database of Protein Domain Definitions


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The current cluster is formed at a score of 1.598

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Classes% of representative set
undefined 45.71
Alpha and beta (a/b) 8.57
Alpha and beta (a+b) 2.86
All alpha 42.86
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 45.71 2.52
Alpha and beta (a/b)
DNA-binding winged domain from 3Dee 5.71 0.73
DNA/RNA polymerases Domain III from 3Dee 2.86 0.36
Alpha and beta (a+b)
Urease, gamma-subunit from SCOP 2.86 0.52
All alpha
Annexin Domain from 3Dee 5.71 0.99
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin from SCOP 8.57 1.48
DNA-binding 3-helical bundle from 3Dee 14.29 2.46
EF-hand from 3Dee 5.71 0.99
Thymidine phosphorylase Domain I from 3Dee 2.86 0.49
Trp repressor from SCOP 2.86 0.49
Uteroglobin-like from SCOP 2.86 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1leb-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
1bib-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
1hstb-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
2cgpc-2 [seq. related domains] All alpha DNA-binding 3-helical bundle
2dtr-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
3hsf-1 [seq. related domains] Alpha and beta (a/b) DNA-binding winged domain
1awca-1 [seq. related domains] Alpha and beta (a/b) DNA-binding winged domain
1ktq-4 [seq. related domains] Alpha and beta (a/b) DNA/RNA polymerases Domain III
1jhga-1 [seq. related domains] All alpha Trp repressor
1utrb-1 [seq. related domains] All alpha Uteroglobin-like
1sfe-2 [seq. related domains] undefined undefined
2ezl-1 [seq. related domains] undefined undefined
1iba-1 [seq. related domains] undefined undefined
1foy-1 [seq. related domains] undefined undefined
1vhrb-1 [seq. related domains] undefined undefined
1gtpc-3 [seq. related domains] undefined undefined
2hfh-1 [seq. related domains] undefined undefined
1if1b-1 [seq. related domains] undefined undefined
2fokb-3 [seq. related domains] undefined undefined
1ignb-2 [seq. related domains] undefined undefined
1opc-1 [seq. related domains] undefined undefined
1aoy-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1aeif-2 [seq. related domains] All alpha Annexin Domain
1aeif-3 [seq. related domains] All alpha Annexin Domain
1hyp-1 [seq. related domains] All alpha Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
1hssd-1 [seq. related domains] All alpha Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
1jtb-1 [seq. related domains] All alpha Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
2mysa-4 [seq. related domains] All alpha EF-hand
1wdca-2 [seq. related domains] All alpha EF-hand
1tpt-1 [seq. related domains] All alpha Thymidine phosphorylase Domain I
1a5oa-1 [seq. related domains] Alpha and beta (a+b) Urease, gamma-subunit
1occu-1 [seq. related domains] undefined undefined
1ns1b-1 [seq. related domains] undefined undefined
1pnbb-1 [seq. related domains] undefined undefined
1al04-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.


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