3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 1.698

Ascend tree (bring in more domains)

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Classes% of representative set
undefined 54.55
Alpha and beta (a/b) 13.64
All alpha 31.82
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 54.55 1.89
Alpha and beta (a/b)
DNA-binding winged domain from 3Dee 9.09 0.73
DNA/RNA polymerases Domain III from 3Dee 4.55 0.36
All alpha
DNA-binding 3-helical bundle from 3Dee 22.73 2.46
Trp repressor from SCOP 4.55 0.49
Uteroglobin-like from SCOP 4.55 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1utrb-1 [seq. related domains] All alpha Uteroglobin-like
1iba-1 [seq. related domains] undefined undefined
1foy-1 [seq. related domains] undefined undefined
1vhrb-1 [seq. related domains] undefined undefined
1ignb-2 [seq. related domains] undefined undefined
1gtpc-3 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1hstb-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
1bib-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
2dtr-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
2cgpc-2 [seq. related domains] All alpha DNA-binding 3-helical bundle
1leb-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
1awca-1 [seq. related domains] Alpha and beta (a/b) DNA-binding winged domain
3hsf-1 [seq. related domains] Alpha and beta (a/b) DNA-binding winged domain
1ktq-4 [seq. related domains] Alpha and beta (a/b) DNA/RNA polymerases Domain III
1jhga-1 [seq. related domains] All alpha Trp repressor
1aoy-1 [seq. related domains] undefined undefined
2hfh-1 [seq. related domains] undefined undefined
1if1b-1 [seq. related domains] undefined undefined
2fokb-3 [seq. related domains] undefined undefined
2ezl-1 [seq. related domains] undefined undefined
1opc-1 [seq. related domains] undefined undefined
1sfe-2 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

3dee@compbio.dundee.ac.uk