3 Dee - Database of Protein Domain Definitions


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The current cluster is formed at a score of 5.419

Ascend tree (bring in more domains)

Classes% of representative set
undefined 20.00
Peptides 20.00
All alpha 60.00
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 20.00 0.16
Peptides
Transmembrane helical fragments from 3Dee 20.00 2.04
All alpha
Long alpha-hairpin from SCOP 40.00 0.99
ROP protein from 3Dee 20.00 0.49

It is formed by merging the following clusters

Cluster 0

All domains in cluster 0 sub-divide into single membered clusters

1bhb-1 [seq. related domains] Peptides Transmembrane helical fragments
1aikn-1 [seq. related domains] undefined undefined

Cluster 1

Descend tree into cluster 1

1kfd-2 [seq. related domains] All alpha Long alpha-hairpin
1grj-1 [seq. related domains] All alpha Long alpha-hairpin
1gtoa-1 [seq. related domains] All alpha ROP protein

View superpositions of "checked" domains


Enter PDB code - optionally suffixing the code with the chain id.


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