3 Dee - Database of Protein Domain Definitions


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The current cluster is formed at a score of 1.293

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Classes% of representative set
undefined 35.48
Peptides 3.23
Alpha and beta (a/b) 3.23
All alpha 58.06
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 35.48 1.73
Peptides
Transmembrane helical fragments from 3Dee 3.23 2.04
Alpha and beta (a/b)
Barstar (barnase inhibitor) from SCOP 3.23 0.36
All alpha
4-helical cytokines Short chain from 3Dee 3.23 0.49
Acyl-CoA binding protein from 3Dee 3.23 0.49
Anaphylotoxins (complement system) from SCOP 3.23 0.49
Citrate synthase Domain II from 3Dee 6.45 0.99
FIS protein from 3Dee 3.23 0.49
Four-helical up-and-down bundle from SCOP 3.23 0.49
Heme-linked catalases C-terminal domain from 3Dee 3.23 0.49
Hemocyanin, N-terminal domain from SCOP 6.45 0.99
Immunoglobulin-binding protein A, fragment B from 3Dee 3.23 0.49
Long alpha-hairpin from SCOP 9.68 1.48
Oligomers of long helices from 3Dee 3.23 0.49
ROP protein from 3Dee 3.23 0.49
Restriction endonucleases helical domain from 3Dee 3.23 0.49
Spectrin repeat unit from 3Dee 3.23 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1vlk-1 [seq. related domains] All alpha 4-helical cytokines Short chain
2abd-1 [seq. related domains] All alpha Acyl-CoA binding protein
1cfaa-1 [seq. related domains] All alpha Anaphylotoxins (complement system)
1f36b-1 [seq. related domains] All alpha FIS protein
1lbid-3 [seq. related domains] All alpha Four-helical up-and-down bundle
1spzz-1 [seq. related domains] All alpha Immunoglobulin-binding protein A, fragment B
1ktq-2 [seq. related domains] All alpha Long alpha-hairpin
1grj-1 [seq. related domains] All alpha Long alpha-hairpin
1kfd-2 [seq. related domains] All alpha Long alpha-hairpin
1afd3-1 [seq. related domains] All alpha Oligomers of long helices
1gtoa-1 [seq. related domains] All alpha ROP protein
1pvib-1 [seq. related domains] All alpha Restriction endonucleases helical domain
2spcb-2 [seq. related domains] All alpha Spectrin repeat unit
1bhb-1 [seq. related domains] Peptides Transmembrane helical fragments
1afob-1 [seq. related domains] undefined undefined
1tdtc-1 [seq. related domains] undefined undefined
1ab3-1 [seq. related domains] undefined undefined
1beo-1 [seq. related domains] undefined undefined
1lre-1 [seq. related domains] undefined undefined
1aikn-1 [seq. related domains] undefined undefined
1tbgh-1 [seq. related domains] undefined undefined
2hp8-1 [seq. related domains] undefined undefined
1sknp-1 [seq. related domains] undefined undefined
1ajyb-2 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1a19b-1 [seq. related domains] Alpha and beta (a/b) Barstar (barnase inhibitor)
1aj8b-2 [seq. related domains] All alpha Citrate synthase Domain II
3cts-2 [seq. related domains] All alpha Citrate synthase Domain II
8cata-3 [seq. related domains] All alpha Heme-linked catalases C-terminal domain
1hc2-1 [seq. related domains] All alpha Hemocyanin, N-terminal domain
1nol-1 [seq. related domains] All alpha Hemocyanin, N-terminal domain
1sly-2 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.


3dee@compbio.dundee.ac.uk