3 Dee - Database of Protein Domain Definitions

The current cluster is formed at a score of 1.409

Ascend tree (bring in more domains)

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• Classes

• All alpha folds
• Peptides folds
• undefined folds

• Cluster 1
• Cluster 2

Breakdown into folds	% of cluster	% of class
undefined
undefined from 3Dee	41.67	1.57
Peptides
Transmembrane helical fragments from 3Dee	4.17	2.04
All alpha
4-helical cytokines Short chain from 3Dee	4.17	0.49
Acyl-CoA binding protein from 3Dee	4.17	0.49
Anaphylotoxins (complement system) from SCOP	4.17	0.49
FIS protein from 3Dee	4.17	0.49
Four-helical up-and-down bundle from SCOP	4.17	0.49
Immunoglobulin-binding protein A, fragment B from 3Dee	4.17	0.49
Long alpha-hairpin from SCOP	12.50	1.48
Oligomers of long helices from 3Dee	4.17	0.49
ROP protein from 3Dee	4.17	0.49
Restriction endonucleases helical domain from 3Dee	4.17	0.49
Spectrin repeat unit from 3Dee	4.17	0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1vlk-1	[seq. related domains]	All alpha	4-helical cytokines Short chain
2abd-1	[seq. related domains]	All alpha	Acyl-CoA binding protein
1cfaa-1	[seq. related domains]	All alpha	Anaphylotoxins (complement system)
1f36b-1	[seq. related domains]	All alpha	FIS protein
1lbid-3	[seq. related domains]	All alpha	Four-helical up-and-down bundle
1spzz-1	[seq. related domains]	All alpha	Immunoglobulin-binding protein A, fragment B
1ktq-2	[seq. related domains]	All alpha	Long alpha-hairpin
1kfd-2	[seq. related domains]	All alpha	Long alpha-hairpin
1grj-1	[seq. related domains]	All alpha	Long alpha-hairpin
1gtoa-1	[seq. related domains]	All alpha	ROP protein
1pvib-1	[seq. related domains]	All alpha	Restriction endonucleases helical domain
1bhb-1	[seq. related domains]	Peptides	Transmembrane helical fragments
1ab3-1	[seq. related domains]	undefined	undefined
1beo-1	[seq. related domains]	undefined	undefined
1lre-1	[seq. related domains]	undefined	undefined
1aikn-1	[seq. related domains]	undefined	undefined
1sknp-1	[seq. related domains]	undefined	undefined
2hp8-1	[seq. related domains]	undefined	undefined
1tdtc-1	[seq. related domains]	undefined	undefined

Cluster 2

Descend tree into cluster 2

1afd3-1	[seq. related domains]	All alpha	Oligomers of long helices
2spcb-2	[seq. related domains]	All alpha	Spectrin repeat unit
1tbgh-1	[seq. related domains]	undefined	undefined
1afob-1	[seq. related domains]	undefined	undefined
1ajyb-2	[seq. related domains]	undefined	undefined

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