3 Dee - Database of Protein Domain Definitions

The current cluster is formed at a score of 2.209

Ascend tree (bring in more domains)

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• Classes

• All alpha folds
• Peptides folds
• undefined folds

• Cluster 1
• Cluster 2

Breakdown into folds	% of cluster	% of class
undefined
undefined from 3Dee	36.84	1.10
Peptides
Transmembrane helical fragments from 3Dee	5.26	2.04
All alpha
4-helical cytokines Short chain from 3Dee	5.26	0.49
Acyl-CoA binding protein from 3Dee	5.26	0.49
Anaphylotoxins (complement system) from SCOP	5.26	0.49
FIS protein from 3Dee	5.26	0.49
Four-helical up-and-down bundle from SCOP	5.26	0.49
Immunoglobulin-binding protein A, fragment B from 3Dee	5.26	0.49
Long alpha-hairpin from SCOP	15.79	1.48
ROP protein from 3Dee	5.26	0.49
Restriction endonucleases helical domain from 3Dee	5.26	0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1vlk-1	[seq. related domains]	All alpha	4-helical cytokines Short chain
1cfaa-1	[seq. related domains]	All alpha	Anaphylotoxins (complement system)
1f36b-1	[seq. related domains]	All alpha	FIS protein
1ktq-2	[seq. related domains]	All alpha	Long alpha-hairpin
1pvib-1	[seq. related domains]	All alpha	Restriction endonucleases helical domain
1sknp-1	[seq. related domains]	undefined	undefined
1ab3-1	[seq. related domains]	undefined	undefined

Cluster 2

Descend tree into cluster 2

2abd-1	[seq. related domains]	All alpha	Acyl-CoA binding protein
1lbid-3	[seq. related domains]	All alpha	Four-helical up-and-down bundle
1spzz-1	[seq. related domains]	All alpha	Immunoglobulin-binding protein A, fragment B
1kfd-2	[seq. related domains]	All alpha	Long alpha-hairpin
1grj-1	[seq. related domains]	All alpha	Long alpha-hairpin
1gtoa-1	[seq. related domains]	All alpha	ROP protein
1bhb-1	[seq. related domains]	Peptides	Transmembrane helical fragments
1beo-1	[seq. related domains]	undefined	undefined
1lre-1	[seq. related domains]	undefined	undefined
1tdtc-1	[seq. related domains]	undefined	undefined
1aikn-1	[seq. related domains]	undefined	undefined
2hp8-1	[seq. related domains]	undefined	undefined

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Enter PDB code - optionally suffixing the code with the chain id.

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