3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 2.661

Ascend tree (bring in more domains)

Classes% of representative set
undefined 41.67
Peptides 8.33
All alpha 50.00
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 41.67 0.79
Peptides
Transmembrane helical fragments from 3Dee 8.33 2.04
All alpha
Acyl-CoA binding protein from 3Dee 8.33 0.49
Four-helical up-and-down bundle from SCOP 8.33 0.49
Immunoglobulin-binding protein A, fragment B from 3Dee 8.33 0.49
Long alpha-hairpin from SCOP 16.67 0.99
ROP protein from 3Dee 8.33 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

2abd-1 [seq. related domains] All alpha Acyl-CoA binding protein
1lbid-3 [seq. related domains] All alpha Four-helical up-and-down bundle
1spzz-1 [seq. related domains] All alpha Immunoglobulin-binding protein A, fragment B
1kfd-2 [seq. related domains] All alpha Long alpha-hairpin
1grj-1 [seq. related domains] All alpha Long alpha-hairpin
1gtoa-1 [seq. related domains] All alpha ROP protein
1bhb-1 [seq. related domains] Peptides Transmembrane helical fragments
1lre-1 [seq. related domains] undefined undefined
1aikn-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1tdtc-1 [seq. related domains] undefined undefined
2hp8-1 [seq. related domains] undefined undefined
1beo-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

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