3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 3.207

Ascend tree (bring in more domains)

Classes% of representative set
undefined 22.22
Peptides 11.11
All alpha 66.67
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 22.22 0.31
Peptides
Transmembrane helical fragments from 3Dee 11.11 2.04
All alpha
Acyl-CoA binding protein from 3Dee 11.11 0.49
Four-helical up-and-down bundle from SCOP 11.11 0.49
Immunoglobulin-binding protein A, fragment B from 3Dee 11.11 0.49
Long alpha-hairpin from SCOP 22.22 0.99
ROP protein from 3Dee 11.11 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

2abd-1 [seq. related domains] All alpha Acyl-CoA binding protein
1lbid-3 [seq. related domains] All alpha Four-helical up-and-down bundle
1spzz-1 [seq. related domains] All alpha Immunoglobulin-binding protein A, fragment B

Cluster 2

Descend tree into cluster 2

1kfd-2 [seq. related domains] All alpha Long alpha-hairpin
1grj-1 [seq. related domains] All alpha Long alpha-hairpin
1gtoa-1 [seq. related domains] All alpha ROP protein
1bhb-1 [seq. related domains] Peptides Transmembrane helical fragments
1aikn-1 [seq. related domains] undefined undefined
1lre-1 [seq. related domains] undefined undefined

View superpositions of "checked" domains

Enter PDB code - optionally suffixing the code with the chain id.

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