3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 1.412

Ascend tree (bring in more domains)

Classes% of representative set
undefined 8.33
Small proteins 8.33
Alpha and beta (a+b) 8.33
All alpha 75.00
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 8.33 0.16
Small proteins
Glucocorticoid receptor-like (DNA-binding domain) from SCOP 8.33 0.87
Alpha and beta (a+b)
Nucleotidyltransferases Domain II from 3Dee 8.33 0.52
All alpha
Diphtheria toxin repressor (DtxR) dimerization domain from 3Dee 8.33 0.49
Hexokinase all helical domain from 3Dee 8.33 0.49
Oligomers of long helices from 3Dee 16.67 0.99
lambda repressor-like DNA-binding domains from SCOP 41.67 2.46

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

2dtr-2 [seq. related domains] All alpha Diphtheria toxin repressor (DtxR) dimerization domain
2bpgb-3 [seq. related domains] Alpha and beta (a+b) Nucleotidyltransferases Domain II
1d66b-2 [seq. related domains] All alpha Oligomers of long helices
1pyib-2 [seq. related domains] All alpha Oligomers of long helices
1au7b-1 [seq. related domains] All alpha lambda repressor-like DNA-binding domains
1lmb4-1 [seq. related domains] All alpha lambda repressor-like DNA-binding domains
1adr-1 [seq. related domains] All alpha lambda repressor-like DNA-binding domains
2r63-1 [seq. related domains] All alpha lambda repressor-like DNA-binding domains
1ner-1 [seq. related domains] All alpha lambda repressor-like DNA-binding domains

Cluster 2

Descend tree into cluster 2

2nlla-1 [seq. related domains] Small proteins Glucocorticoid receptor-like (DNA-binding domain)
2yhx-1 [seq. related domains] All alpha Hexokinase all helical domain
1af7-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

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