3 Dee - Database of Protein Domain Definitions

[Search] [HELP]

The current cluster is formed at a score of 2.083

Ascend tree (bring in more domains)

Classes% of representative set
Alpha and beta (a+b) 11.11
All alpha 88.89
Breakdown into folds% of cluster % of class
Alpha and beta (a+b)
Nucleotidyltransferases Domain II from 3Dee 11.11 0.52
All alpha
Diphtheria toxin repressor (DtxR) dimerization domain from 3Dee 11.11 0.49
Oligomers of long helices from 3Dee 22.22 0.99
lambda repressor-like DNA-binding domains from SCOP 55.56 2.46

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

2bpgb-3 [seq. related domains] Alpha and beta (a+b) Nucleotidyltransferases Domain II
1adr-1 [seq. related domains] All alpha lambda repressor-like DNA-binding domains
2r63-1 [seq. related domains] All alpha lambda repressor-like DNA-binding domains
1au7b-1 [seq. related domains] All alpha lambda repressor-like DNA-binding domains
1lmb4-1 [seq. related domains] All alpha lambda repressor-like DNA-binding domains
1ner-1 [seq. related domains] All alpha lambda repressor-like DNA-binding domains

Cluster 2

Descend tree into cluster 2

2dtr-2 [seq. related domains] All alpha Diphtheria toxin repressor (DtxR) dimerization domain
1d66b-2 [seq. related domains] All alpha Oligomers of long helices
1pyib-2 [seq. related domains] All alpha Oligomers of long helices

Enter PDB code - optionally suffixing the code with the chain id.

3dee@compbio.dundee.ac.uk