3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 1.745

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Classes% of representative set
undefined 33.33
Small proteins 5.56
Alpha and beta (a+b) 5.56
All beta 2.78
All alpha 52.78
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 33.33 1.89
Small proteins
Crambin-like from SCOP 2.78 0.87
Heat-stable enterotoxin B from 3Dee 2.78 0.87
Alpha and beta (a+b)
Ribosome inactivating proteins (RIP) Domain II from 3Dee 5.56 1.04
All beta
Single-stranded left-handed beta-helix Domain II from 3Dee 2.78 0.45
All alpha
DNA-binding 3-helical bundle from 3Dee 27.78 4.93
Disulphide-bond formation facilitator (DSBA), insertion domain from SCOP 2.78 0.49
Mu transposase, DNA-binding domain from 3Dee 2.78 0.49
Nucleotidyltransferases Domain III from 3Dee 2.78 0.49
Thermolysin-like metalloproteases, C-terminal domain from SCOP 2.78 0.49
lambda repressor-like DNA-binding domains from SCOP 8.33 1.48
small domain attached to TIM barrel from 3Dee 2.78 0.49
the C-terminal domain of RNA polymerase alpha subunit from 3Dee 2.78 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1ab1-1 [seq. related domains] Small proteins Crambin-like
1akha-2 [seq. related domains] All alpha DNA-binding 3-helical bundle
1vnd-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
1hcra-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
1pdnc-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
1akha-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
2lfb-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
1pdnc-2 [seq. related domains] All alpha DNA-binding 3-helical bundle
1hdp-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
1ret-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
1a5j-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
1acvb-2 [seq. related domains] All alpha Disulphide-bond formation facilitator (DSBA), insertion domain
1ehs-1 [seq. related domains] Small proteins Heat-stable enterotoxin B
1bryz-2 [seq. related domains] Alpha and beta (a+b) Ribosome inactivating proteins (RIP) Domain II
1ifu-2 [seq. related domains] Alpha and beta (a+b) Ribosome inactivating proteins (RIP) Domain II
1lxa-2 [seq. related domains] All beta Single-stranded left-handed beta-helix Domain II
1trlb-1 [seq. related domains] All alpha Thermolysin-like metalloproteases, C-terminal domain
1lbgd-5 [seq. related domains] All alpha lambda repressor-like DNA-binding domains
2puga-1 [seq. related domains] All alpha lambda repressor-like DNA-binding domains
1uxd-1 [seq. related domains] All alpha lambda repressor-like DNA-binding domains
1vib-1 [seq. related domains] undefined undefined
1jud-2 [seq. related domains] undefined undefined
1wjdb-1 [seq. related domains] undefined undefined
2fusb-3 [seq. related domains] undefined undefined
2ezi-1 [seq. related domains] undefined undefined
1nkl-1 [seq. related domains] undefined undefined
1tc3c-1 [seq. related domains] undefined undefined
1aum-1 [seq. related domains] undefined undefined
1sly-4 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1tnt-1 [seq. related domains] All alpha Mu transposase, DNA-binding domain
1bpza-1 [seq. related domains] All alpha Nucleotidyltransferases Domain III
1cec-2 [seq. related domains] All alpha small domain attached to TIM barrel
1coo-1 [seq. related domains] All alpha the C-terminal domain of RNA polymerase alpha subunit
1taq-2 [seq. related domains] undefined undefined
1cuk-2 [seq. related domains] undefined undefined
1exnb-2 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

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