3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 0.223

Ascend tree (bring in more domains)

Classes% of representative set
Small proteins 66.67
Peptides 16.67
All beta 16.67
Breakdown into folds% of cluster % of class
Small proteins
Cytochrome c3 from 3Dee 16.67 0.87
HIPIP (high potential iron protein) from SCOP 50.00 2.61
Peptides
Transactivation protein TAT (TAT EIAVY) from 3Dee 16.67 2.04
All beta
Neurophysin II from SCOP 16.67 0.45

It is formed by merging the following clusters

Cluster 0

All domains in cluster 0 sub-divide into single membered clusters

1bn22-1 [seq. related domains] All beta Neurophysin II

Cluster 1

Descend tree into cluster 1

1wad-1 [seq. related domains] Small proteins Cytochrome c3
1isub-1 [seq. related domains] Small proteins HIPIP (high potential iron protein)
1noe-1 [seq. related domains] Small proteins HIPIP (high potential iron protein)
1pij-1 [seq. related domains] Small proteins HIPIP (high potential iron protein)
1tvt-1 [seq. related domains] Peptides Transactivation protein TAT (TAT EIAVY)

Enter PDB code - optionally suffixing the code with the chain id.

3dee@compbio.dundee.ac.uk