3 Dee - Database of Protein Domain Definitions

[Search] [HELP]

The current cluster is formed at a score of 0.571

Ascend tree (bring in more domains)

Go to (document sections)

Classes% of representative set
undefined 28.57
Alpha and beta (a/b) 38.10
Alpha and beta (a+b) 33.33
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 28.57 0.94
Alpha and beta (a/b)
The "swivelling" beta/beta/alpha domain from SCOP 4.76 0.36
Thioredoxin-like from 3Dee 33.33 2.55
Alpha and beta (a+b)
Cysteine proteinases Domain II from 3Dee 4.76 0.52
Metzincins, catalytic (N-terminal) domain from 3Dee 23.81 2.59
Ribosomal protein S5 domain 2-like from SCOP 4.76 0.52

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

2aim-2 [seq. related domains] Alpha and beta (a+b) Cysteine proteinases Domain II
1iaa-2 [seq. related domains] Alpha and beta (a+b) Metzincins, catalytic (N-terminal) domain
2ayk-1 [seq. related domains] Alpha and beta (a+b) Metzincins, catalytic (N-terminal) domain
1kuh-1 [seq. related domains] Alpha and beta (a+b) Metzincins, catalytic (N-terminal) domain
1esp-1 [seq. related domains] Alpha and beta (a+b) Metzincins, catalytic (N-terminal) domain
2aigp-1 [seq. related domains] Alpha and beta (a+b) Metzincins, catalytic (N-terminal) domain
1elo-4 [seq. related domains] Alpha and beta (a+b) Ribosomal protein S5 domain 2-like
1aua-1 [seq. related domains] undefined undefined
1lml-1 [seq. related domains] undefined undefined
1qbb-2 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1aonn-3 [seq. related domains] Alpha and beta (a/b) The "swivelling" beta/beta/alpha domain
1grx-1 [seq. related domains] Alpha and beta (a/b) Thioredoxin-like
1aazb-1 [seq. related domains] Alpha and beta (a/b) Thioredoxin-like
1bayb-1 [seq. related domains] Alpha and beta (a/b) Thioredoxin-like
1mek-1 [seq. related domains] Alpha and beta (a/b) Thioredoxin-like
1acvb-1 [seq. related domains] Alpha and beta (a/b) Thioredoxin-like
1prxb-1 [seq. related domains] Alpha and beta (a/b) Thioredoxin-like
1gp1b-1 [seq. related domains] Alpha and beta (a/b) Thioredoxin-like
2trcp-2 [seq. related domains] undefined undefined
1gnwb-1 [seq. related domains] undefined undefined
1fohd-4 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

3dee@compbio.dundee.ac.uk