3 Dee - Database of Protein Domain Definitions


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The current cluster is formed at a score of 0.239

Ascend tree (bring in more domains)

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Classes% of representative set
undefined 31.82
Alpha and beta (a/b) 36.36
Alpha and beta (a+b) 31.82
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 31.82 1.10
Alpha and beta (a/b)
The "swivelling" beta/beta/alpha domain from SCOP 4.55 0.36
Thioredoxin-like from 3Dee 31.82 2.55
Alpha and beta (a+b)
Cysteine proteinases Domain II from 3Dee 4.55 0.52
Metzincins, catalytic (N-terminal) domain from 3Dee 22.73 2.59
Ribosomal protein S5 domain 2-like from SCOP 4.55 0.52

It is formed by merging the following clusters

Cluster 0

All domains in cluster 0 sub-divide into single membered clusters

1ois-1 [seq. related domains] undefined undefined

Cluster 1

Descend tree into cluster 1

2aim-2 [seq. related domains] Alpha and beta (a+b) Cysteine proteinases Domain II
1iaa-2 [seq. related domains] Alpha and beta (a+b) Metzincins, catalytic (N-terminal) domain
1esp-1 [seq. related domains] Alpha and beta (a+b) Metzincins, catalytic (N-terminal) domain
1kuh-1 [seq. related domains] Alpha and beta (a+b) Metzincins, catalytic (N-terminal) domain
2ayk-1 [seq. related domains] Alpha and beta (a+b) Metzincins, catalytic (N-terminal) domain
2aigp-1 [seq. related domains] Alpha and beta (a+b) Metzincins, catalytic (N-terminal) domain
1elo-4 [seq. related domains] Alpha and beta (a+b) Ribosomal protein S5 domain 2-like
1aonn-3 [seq. related domains] Alpha and beta (a/b) The "swivelling" beta/beta/alpha domain
1bayb-1 [seq. related domains] Alpha and beta (a/b) Thioredoxin-like
1mek-1 [seq. related domains] Alpha and beta (a/b) Thioredoxin-like
1acvb-1 [seq. related domains] Alpha and beta (a/b) Thioredoxin-like
1prxb-1 [seq. related domains] Alpha and beta (a/b) Thioredoxin-like
1gp1b-1 [seq. related domains] Alpha and beta (a/b) Thioredoxin-like
1grx-1 [seq. related domains] Alpha and beta (a/b) Thioredoxin-like
1aazb-1 [seq. related domains] Alpha and beta (a/b) Thioredoxin-like
1aua-1 [seq. related domains] undefined undefined
1qbb-2 [seq. related domains] undefined undefined
1lml-1 [seq. related domains] undefined undefined
1gnwb-1 [seq. related domains] undefined undefined
2trcp-2 [seq. related domains] undefined undefined
1fohd-4 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.


3dee@compbio.dundee.ac.uk