3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 2.498

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Classes% of representative set
undefined 55.56
Alpha and beta (a/b) 44.44
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 55.56 1.57
Alpha and beta (a/b)
Biotin carboxylase N-terminal domain-like from SCOP 16.67 1.09
Glycinamide ribonucleotide transformylase Domain I from 3Dee 5.56 0.36
Nitrogenase iron-molybdenum protein, beta and alpha chains domain II from 3Dee 5.56 0.36
P-loop containing nucleotide triphosphate hydrolases from SCOP 5.56 0.36
Phosphofructokinase Domain II from 3Dee 5.56 0.36
Type I DNA topoisomerase Rossmann-fold like domain from 3Dee 5.56 0.36

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1gsh-1 [seq. related domains] Alpha and beta (a/b) Biotin carboxylase N-terminal domain-like
1bncb-1 [seq. related domains] Alpha and beta (a/b) Biotin carboxylase N-terminal domain-like
1iow-1 [seq. related domains] Alpha and beta (a/b) Biotin carboxylase N-terminal domain-like
1garb-1 [seq. related domains] Alpha and beta (a/b) Glycinamide ribonucleotide transformylase Domain I
1gky-1 [seq. related domains] Alpha and beta (a/b) P-loop containing nucleotide triphosphate hydrolases
1ecl-1 [seq. related domains] Alpha and beta (a/b) Type I DNA topoisomerase Rossmann-fold like domain
1pdo-1 [seq. related domains] undefined undefined
1e2b-1 [seq. related domains] undefined undefined
1uag-1 [seq. related domains] undefined undefined
1ad2-2 [seq. related domains] undefined undefined
1kmnd-2 [seq. related domains] undefined undefined
1delb-1 [seq. related domains] undefined undefined
1atib-2 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1miod-2 [seq. related domains] Alpha and beta (a/b) Nitrogenase iron-molybdenum protein, beta and alpha chains domain II
2pfkd-2 [seq. related domains] Alpha and beta (a/b) Phosphofructokinase Domain II
1ak1-1 [seq. related domains] undefined undefined
1ak1-2 [seq. related domains] undefined undefined
1lbeb-2 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

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