3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 2.068

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Classes% of representative set
undefined 38.89
Alpha and beta (a/b) 61.11
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 38.89 2.20
Alpha and beta (a/b)
Biotin carboxylase N-terminal domain-like from SCOP 8.33 1.09
FAD (also NAD)-binding motif from 3Dee 13.89 1.82
Ferredoxin reductase-like, C-terminal NADP-linked domain from SCOP 11.11 1.46
Glutaminase/Asparaginase Domain II from 3Dee 2.78 0.36
Glycinamide ribonucleotide transformylase Domain I from 3Dee 2.78 0.36
NAD(P)-binding Rossmann-fold domains from SCOP 2.78 0.36
Nitrogenase iron-molybdenum protein, beta and alpha chains domain II from 3Dee 2.78 0.36
Nitrogenase iron-molybdenum protein, beta chain domain I from 3Dee 2.78 0.36
P-loop containing nucleotide triphosphate hydrolases from SCOP 2.78 0.36
Phosphofructokinase Domain II from 3Dee 2.78 0.36
Pyruvate kinase, C-terminal domain from SCOP 5.56 0.73
Type I DNA topoisomerase Rossmann-fold like domain from 3Dee 2.78 0.36

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1bncb-1 [seq. related domains] Alpha and beta (a/b) Biotin carboxylase N-terminal domain-like
1gsh-1 [seq. related domains] Alpha and beta (a/b) Biotin carboxylase N-terminal domain-like
1iow-1 [seq. related domains] Alpha and beta (a/b) Biotin carboxylase N-terminal domain-like
1garb-1 [seq. related domains] Alpha and beta (a/b) Glycinamide ribonucleotide transformylase Domain I
1miod-2 [seq. related domains] Alpha and beta (a/b) Nitrogenase iron-molybdenum protein, beta and alpha chains domain II
1gky-1 [seq. related domains] Alpha and beta (a/b) P-loop containing nucleotide triphosphate hydrolases
2pfkd-2 [seq. related domains] Alpha and beta (a/b) Phosphofructokinase Domain II
1ecl-1 [seq. related domains] Alpha and beta (a/b) Type I DNA topoisomerase Rossmann-fold like domain
1ad2-2 [seq. related domains] undefined undefined
1uag-1 [seq. related domains] undefined undefined
1ak1-1 [seq. related domains] undefined undefined
1ak1-2 [seq. related domains] undefined undefined
1pdo-1 [seq. related domains] undefined undefined
1lbeb-2 [seq. related domains] undefined undefined
1e2b-1 [seq. related domains] undefined undefined
1kmnd-2 [seq. related domains] undefined undefined
1delb-1 [seq. related domains] undefined undefined
1atib-2 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1vdc-2 [seq. related domains] Alpha and beta (a/b) FAD (also NAD)-binding motif
1fcdb-2 [seq. related domains] Alpha and beta (a/b) FAD (also NAD)-binding motif
2tmdb-3 [seq. related domains] Alpha and beta (a/b) FAD (also NAD)-binding motif
1joa-2 [seq. related domains] Alpha and beta (a/b) FAD (also NAD)-binding motif
3grt-2 [seq. related domains] Alpha and beta (a/b) FAD (also NAD)-binding motif
1fdr-2 [seq. related domains] Alpha and beta (a/b) Ferredoxin reductase-like, C-terminal NADP-linked domain
1ndh-2 [seq. related domains] Alpha and beta (a/b) Ferredoxin reductase-like, C-terminal NADP-linked domain
2pia-2 [seq. related domains] Alpha and beta (a/b) Ferredoxin reductase-like, C-terminal NADP-linked domain
1quf-2 [seq. related domains] Alpha and beta (a/b) Ferredoxin reductase-like, C-terminal NADP-linked domain
4ecad-2 [seq. related domains] Alpha and beta (a/b) Glutaminase/Asparaginase Domain II
1ykfd-2 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
1miod-1 [seq. related domains] Alpha and beta (a/b) Nitrogenase iron-molybdenum protein, beta chain domain I
1pyk-3 [seq. related domains] Alpha and beta (a/b) Pyruvate kinase, C-terminal domain
1a3wb-1 [seq. related domains] Alpha and beta (a/b) Pyruvate kinase, C-terminal domain
1vhrb-2 [seq. related domains] undefined undefined
1buz-1 [seq. related domains] undefined undefined
1uag-3 [seq. related domains] undefined undefined
1jdbk-4 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

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