3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 2.955

Ascend tree (bring in more domains)

Classes% of representative set
undefined 8.33
Alpha and beta (a/b) 91.67
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 8.33 0.16
Alpha and beta (a/b)
FAD (also NAD)-binding motif from 3Dee 41.67 1.82
Ferredoxin reductase-like, C-terminal NADP-linked domain from SCOP 33.33 1.46
NAD(P)-binding Rossmann-fold domains from SCOP 8.33 0.36
Nitrogenase iron-molybdenum protein, beta chain domain I from 3Dee 8.33 0.36

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1ndh-2 [seq. related domains] Alpha and beta (a/b) Ferredoxin reductase-like, C-terminal NADP-linked domain
1fdr-2 [seq. related domains] Alpha and beta (a/b) Ferredoxin reductase-like, C-terminal NADP-linked domain
2pia-2 [seq. related domains] Alpha and beta (a/b) Ferredoxin reductase-like, C-terminal NADP-linked domain
1quf-2 [seq. related domains] Alpha and beta (a/b) Ferredoxin reductase-like, C-terminal NADP-linked domain
1ykfd-2 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
1miod-1 [seq. related domains] Alpha and beta (a/b) Nitrogenase iron-molybdenum protein, beta chain domain I
1jdbk-4 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1joa-2 [seq. related domains] Alpha and beta (a/b) FAD (also NAD)-binding motif
3grt-2 [seq. related domains] Alpha and beta (a/b) FAD (also NAD)-binding motif
1vdc-2 [seq. related domains] Alpha and beta (a/b) FAD (also NAD)-binding motif
1fcdb-2 [seq. related domains] Alpha and beta (a/b) FAD (also NAD)-binding motif
2tmdb-3 [seq. related domains] Alpha and beta (a/b) FAD (also NAD)-binding motif

Enter PDB code - optionally suffixing the code with the chain id.

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