3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 0.563

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Classes% of representative set
undefined 32.54
Alpha and beta (a/b) 66.86
Alpha and beta (a+b) 0.59
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 32.54 8.65
Alpha and beta (a/b)
ATP pyrophosphatases from 3Dee 2.37 1.46
Aconitase, Domain II from 3Dee 0.59 0.36
Aspartate carbamoyltransferase, Catalytic-chain from 3Dee 1.18 0.73
Biotin carboxylase N-terminal domain-like from SCOP 1.78 1.09
CheB methylesterase domain (C-terminal residues 152-349) from 3Dee 0.59 0.36
Dihydrofolate reductases from SCOP 1.18 0.73
FAD (also NAD)-binding motif from 3Dee 2.96 1.82
Ferredoxin reductase-like, C-terminal NADP-linked domain from SCOP 2.37 1.46
Flavodoxin-like from SCOP 7.69 4.74
Glucosamine 6-phosphate deaminase from SCOP 0.59 0.36
Glutaminase/Asparaginase Domain I from 3Dee 0.59 0.36
Glutaminase/Asparaginase Domain II from 3Dee 0.59 0.36
Glycinamide ribonucleotide transformylase Domain I from 3Dee 0.59 0.36
Integrin A (or I) domain from SCOP 0.59 0.36
N-carbamoylsarcosine amidohydrolase from 3Dee 0.59 0.36
NAD(P)-binding Rossmann-fold domains from SCOP 7.69 4.74
Nitrogenase iron-molybdenum protein, alpha and beta chains domain III from 3Dee 1.18 0.73
Nitrogenase iron-molybdenum protein, alpha chain domain I from 3Dee 0.59 0.36
Nitrogenase iron-molybdenum protein, beta and alpha chains domain II from 3Dee 0.59 0.36
Nitrogenase iron-molybdenum protein, beta chain domain I from 3Dee 0.59 0.36
P-loop containing nucleotide triphosphate hydrolases from SCOP 5.92 3.65
PLP-dependent transferases Domain II from 3Dee 1.78 1.09
PLP-dependent transferases Domain III from 3Dee 0.59 0.36
Periplasmic binding protein-like I Domain I from 3Dee 3.55 2.19
Periplasmic binding protein-like I Domain II from 3Dee 2.96 1.82
Phosphofructokinase Domain I from 3Dee 0.59 0.36
Phosphofructokinase Domain II from 3Dee 0.59 0.36
Phosphoglucomutase, first 3 domains from SCOP 0.59 0.36
Phosphoglycerate kinase Domain I from 3Dee 1.18 0.73
Phosphoglycerate kinase Domain II from 3Dee 1.18 0.73
Phosphoribosyltransferases (PRTases) from 3Dee 1.78 1.09
Phosphotyrosine protein phosphatases I from 3Dee 0.59 0.36
Pyruvate kinase, C-terminal domain from SCOP 1.18 0.73
Pyruvate oxidase and decarboxylase, middle domain from 3Dee 1.18 0.73
S-adenosyl-L-methionine-dependent methyltransferases Domain I from 3Dee 0.59 0.36
Thiamin-binding from 3Dee 2.96 1.82
Thymidine phosphorylase Domain II - Rossmann-fold like from 3Dee 0.59 0.36
Transketolase, C-terminal domain from 3Dee 0.59 0.36
Tryptophan synthase, beta-subunit Domain I from 3Dee 0.59 0.36
Tryptophan synthase, beta-subunit Domain II from 3Dee 0.59 0.36
Type I DNA topoisomerase Rossmann-fold like domain from 3Dee 0.59 0.36
Uracil-DNA glycosylase from 3Dee 0.59 0.36
beta-Glucosyltransferase & glycogen phosphorylase Domain I from 3Dee 0.59 0.36
beta-Glucosyltransferase & glycogen phosphorylase Domain II from 3Dee 0.59 0.36
Alpha and beta (a+b)
P-loop containing nucleotide triphosphate hydrolases, small a+b insert from 3Dee 0.59 0.52

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1gpmd-5 [seq. related domains] Alpha and beta (a/b) ATP pyrophosphatases
3ts1-1 [seq. related domains] Alpha and beta (a/b) ATP pyrophosphatases
1qtqa-1 [seq. related domains] Alpha and beta (a/b) ATP pyrophosphatases
1gln-1 [seq. related domains] Alpha and beta (a/b) ATP pyrophosphatases
1atq-2 [seq. related domains] Alpha and beta (a/b) Aconitase, Domain II
1akmc-2 [seq. related domains] Alpha and beta (a/b) Aspartate carbamoyltransferase, Catalytic-chain
1akmc-1 [seq. related domains] Alpha and beta (a/b) Aspartate carbamoyltransferase, Catalytic-chain
1iow-1 [seq. related domains] Alpha and beta (a/b) Biotin carboxylase N-terminal domain-like
1gsh-1 [seq. related domains] Alpha and beta (a/b) Biotin carboxylase N-terminal domain-like
1bncb-1 [seq. related domains] Alpha and beta (a/b) Biotin carboxylase N-terminal domain-like
1a2ob-1 [seq. related domains] Alpha and beta (a/b) CheB methylesterase domain (C-terminal residues 152-349)
1daj-1 [seq. related domains] Alpha and beta (a/b) Dihydrofolate reductases
1vdrb-1 [seq. related domains] Alpha and beta (a/b) Dihydrofolate reductases
1joa-2 [seq. related domains] Alpha and beta (a/b) FAD (also NAD)-binding motif
3grt-2 [seq. related domains] Alpha and beta (a/b) FAD (also NAD)-binding motif
2tmdb-3 [seq. related domains] Alpha and beta (a/b) FAD (also NAD)-binding motif
1vdc-2 [seq. related domains] Alpha and beta (a/b) FAD (also NAD)-binding motif
1fcdb-2 [seq. related domains] Alpha and beta (a/b) FAD (also NAD)-binding motif
1quf-2 [seq. related domains] Alpha and beta (a/b) Ferredoxin reductase-like, C-terminal NADP-linked domain
1fdr-2 [seq. related domains] Alpha and beta (a/b) Ferredoxin reductase-like, C-terminal NADP-linked domain
2pia-2 [seq. related domains] Alpha and beta (a/b) Ferredoxin reductase-like, C-terminal NADP-linked domain
1ndh-2 [seq. related domains] Alpha and beta (a/b) Ferredoxin reductase-like, C-terminal NADP-linked domain
1ese-1 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1scud-2 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1ordb-1 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
4cat-2 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
2nadb-1 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
2reqd-3 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1psdb-1 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1scue-3 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1fsp-1 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1ag9b-1 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1oxmb-1 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1reqc-3 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1dxy-1 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1hotb-1 [seq. related domains] Alpha and beta (a/b) Glucosamine 6-phosphate deaminase
4ecad-1 [seq. related domains] Alpha and beta (a/b) Glutaminase/Asparaginase Domain I
4ecad-2 [seq. related domains] Alpha and beta (a/b) Glutaminase/Asparaginase Domain II
1garb-1 [seq. related domains] Alpha and beta (a/b) Glycinamide ribonucleotide transformylase Domain I
1atzb-1 [seq. related domains] Alpha and beta (a/b) Integrin A (or I) domain
1nbac-1 [seq. related domains] Alpha and beta (a/b) N-carbamoylsarcosine amidohydrolase
1dxy-2 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
1dira-1 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
1zid-1 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
1scud-1 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
1ldg-1 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
1bdmb-1 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
1a7kd-1 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
1dapb-1 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
1fdw-1 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
2pgd-1 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
2dpg-1 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
1drw-1 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
1ykfd-2 [seq. related domains] Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
1mioc-3 [seq. related domains] Alpha and beta (a/b) Nitrogenase iron-molybdenum protein, alpha and beta chains domain III
1miod-3 [seq. related domains] Alpha and beta (a/b) Nitrogenase iron-molybdenum protein, alpha and beta chains domain III
1mioc-1 [seq. related domains] Alpha and beta (a/b) Nitrogenase iron-molybdenum protein, alpha chain domain I
1miod-2 [seq. related domains] Alpha and beta (a/b) Nitrogenase iron-molybdenum protein, beta and alpha chains domain II
1miod-1 [seq. related domains] Alpha and beta (a/b) Nitrogenase iron-molybdenum protein, beta chain domain I
1gp2a-2 [seq. related domains] Alpha and beta (a/b) P-loop containing nucleotide triphosphate hydrolases
1elo-1 [seq. related domains] Alpha and beta (a/b) P-loop containing nucleotide triphosphate hydrolases
1n2ch-1 [seq. related domains] Alpha and beta (a/b) P-loop containing nucleotide triphosphate hydrolases
1aipf-2 [seq. related domains] Alpha and beta (a/b) P-loop containing nucleotide triphosphate hydrolases
1dai-1 [seq. related domains] Alpha and beta (a/b) P-loop containing nucleotide triphosphate hydrolases
1tmkb-1 [seq. related domains] Alpha and beta (a/b) P-loop containing nucleotide triphosphate hydrolases
1ankb-1 [seq. related domains] Alpha and beta (a/b) P-loop containing nucleotide triphosphate hydrolases
1gky-1 [seq. related domains] Alpha and beta (a/b) P-loop containing nucleotide triphosphate hydrolases
1fts-2 [seq. related domains] Alpha and beta (a/b) P-loop containing nucleotide triphosphate hydrolases
1guab-1 [seq. related domains] Alpha and beta (a/b) P-loop containing nucleotide triphosphate hydrolases
2recf-1 [seq. related domains] Alpha and beta (a+b) P-loop containing nucleotide triphosphate hydrolases, small a+b insert
1ajsb-2 [seq. related domains] Alpha and beta (a/b) PLP-dependent transferases Domain II
1ordb-2 [seq. related domains] Alpha and beta (a/b) PLP-dependent transferases Domain II
2canc-2 [seq. related domains] Alpha and beta (a/b) PLP-dependent transferases Domain II
2tplb-3 [seq. related domains] Alpha and beta (a/b) PLP-dependent transferases Domain III
2liv-1 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain I
1dbqb-1 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain I
1pea-1 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain I
1ba2b-1 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain I
1bap-1 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain I
1lbgd-6 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain I
2liv-2 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain II
1ba2b-2 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain II
1pea-2 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain II
1bap-2 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain II
1dbqb-2 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain II
2pfkd-1 [seq. related domains] Alpha and beta (a/b) Phosphofructokinase Domain I
2pfkd-2 [seq. related domains] Alpha and beta (a/b) Phosphofructokinase Domain II
1lxtb-1 [seq. related domains] Alpha and beta (a/b) Phosphoglucomutase, first 3 domains
13pkd-1 [seq. related domains] Alpha and beta (a/b) Phosphoglycerate kinase Domain I
2pgk-1 [seq. related domains] Alpha and beta (a/b) Phosphoglycerate kinase Domain I
13pkd-2 [seq. related domains] Alpha and beta (a/b) Phosphoglycerate kinase Domain II
2pgk-2 [seq. related domains] Alpha and beta (a/b) Phosphoglycerate kinase Domain II
1orob-1 [seq. related domains] Alpha and beta (a/b) Phosphoribosyltransferases (PRTases)
1dbrd-1 [seq. related domains] Alpha and beta (a/b) Phosphoribosyltransferases (PRTases)
1ecjd-2 [seq. related domains] Alpha and beta (a/b) Phosphoribosyltransferases (PRTases)
1pnt-1 [seq. related domains] Alpha and beta (a/b) Phosphotyrosine protein phosphatases I
1a3wb-1 [seq. related domains] Alpha and beta (a/b) Pyruvate kinase, C-terminal domain
1pyk-3 [seq. related domains] Alpha and beta (a/b) Pyruvate kinase, C-terminal domain
1powb-2 [seq. related domains] Alpha and beta (a/b) Pyruvate oxidase and decarboxylase, middle domain
1ypdb-2 [seq. related domains] Alpha and beta (a/b) Pyruvate oxidase and decarboxylase, middle domain
5mhta-1 [seq. related domains] Alpha and beta (a/b) S-adenosyl-L-methionine-dependent methyltransferases Domain I
1ypdb-3 [seq. related domains] Alpha and beta (a/b) Thiamin-binding
1powb-3 [seq. related domains] Alpha and beta (a/b) Thiamin-binding
1ay0b-2 [seq. related domains] Alpha and beta (a/b) Thiamin-binding
1ypdb-1 [seq. related domains] Alpha and beta (a/b) Thiamin-binding
1powb-1 [seq. related domains] Alpha and beta (a/b) Thiamin-binding
1ay0b-3 [seq. related domains] Alpha and beta (a/b) Transketolase, C-terminal domain
2tsyb-1 [seq. related domains] Alpha and beta (a/b) Tryptophan synthase, beta-subunit Domain I
2tsyb-2 [seq. related domains] Alpha and beta (a/b) Tryptophan synthase, beta-subunit Domain II
1ecl-1 [seq. related domains] Alpha and beta (a/b) Type I DNA topoisomerase Rossmann-fold like domain
1akz-1 [seq. related domains] Alpha and beta (a/b) Uracil-DNA glycosylase
2bgu-1 [seq. related domains] Alpha and beta (a/b) beta-Glucosyltransferase & glycogen phosphorylase Domain I
2bgu-2 [seq. related domains] Alpha and beta (a/b) beta-Glucosyltransferase & glycogen phosphorylase Domain II
1buz-1 [seq. related domains] undefined undefined
1yub-1 [seq. related domains] undefined undefined
2frvl-1 [seq. related domains] undefined undefined
1lbeb-2 [seq. related domains] undefined undefined
1av6a-1 [seq. related domains] undefined undefined
1uag-3 [seq. related domains] undefined undefined
1ble-1 [seq. related domains] undefined undefined
1pdo-1 [seq. related domains] undefined undefined
1bgw-1 [seq. related domains] undefined undefined
1efvb-3 [seq. related domains] undefined undefined
1iphd-3 [seq. related domains] undefined undefined
1ak1-2 [seq. related domains] undefined undefined
1nsyb-1 [seq. related domains] undefined undefined
1efvb-2 [seq. related domains] undefined undefined
1fjmb-2 [seq. related domains] undefined undefined
1ak1-1 [seq. related domains] undefined undefined
1efvb-1 [seq. related domains] undefined undefined
4dmr-2 [seq. related domains] undefined undefined
1aup-3 [seq. related domains] undefined undefined
2masd-1 [seq. related domains] undefined undefined
1udc-1 [seq. related domains] undefined undefined
1auxb-1 [seq. related domains] undefined undefined
1jdbk-4 [seq. related domains] undefined undefined
1ad3b-4 [seq. related domains] undefined undefined
1lci-1 [seq. related domains] undefined undefined
1wab-1 [seq. related domains] undefined undefined
1lehb-3 [seq. related domains] undefined undefined
1kmnd-2 [seq. related domains] undefined undefined
1uag-1 [seq. related domains] undefined undefined
1xvab-1 [seq. related domains] undefined undefined
1vid-1 [seq. related domains] undefined undefined
1fuif-1 [seq. related domains] undefined undefined
1vhrb-2 [seq. related domains] undefined undefined
1fuif-2 [seq. related domains] undefined undefined
1lci-2 [seq. related domains] undefined undefined
1a5t-1 [seq. related domains] undefined undefined
1delb-1 [seq. related domains] undefined undefined
1fsz-1 [seq. related domains] undefined undefined
1skyb-2 [seq. related domains] undefined undefined
1muga-1 [seq. related domains] undefined undefined
2admb-1 [seq. related domains] undefined undefined
1jdbk-6 [seq. related domains] undefined undefined
1fmtb-1 [seq. related domains] undefined undefined
1rvvz-1 [seq. related domains] undefined undefined
1af7-2 [seq. related domains] undefined undefined
1ofgf-1 [seq. related domains] undefined undefined
1jud-1 [seq. related domains] undefined undefined
1bif-1 [seq. related domains] undefined undefined
1ad2-2 [seq. related domains] undefined undefined
1yvel-1 [seq. related domains] undefined undefined
1a98b-1 [seq. related domains] undefined undefined
1e2b-1 [seq. related domains] undefined undefined
1atib-2 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1tpt-2 [seq. related domains] Alpha and beta (a/b) Thymidine phosphorylase Domain II - Rossmann-fold like
1rkd-1 [seq. related domains] undefined undefined
1uag-2 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

3dee@compbio.dundee.ac.uk