3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 1.592

Ascend tree (bring in more domains)

Classes% of representative set
undefined 7.14
Alpha and beta (a/b) 85.71
Alpha and beta (a+b) 7.14
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 7.14 0.16
Alpha and beta (a/b)
Periplasmic binding protein-like II Domain I from 3Dee 64.29 3.28
Sugar phosphatases alpha/beta C terminal domain from 3Dee 21.43 1.09
Alpha and beta (a+b)
D-amino acid aminotransferase Domain II from 3Dee 7.14 0.52

It is formed by merging the following clusters

Cluster 0

All domains in cluster 0 sub-divide into single membered clusters

1a0gb-2 [seq. related domains] Alpha and beta (a+b) D-amino acid aminotransferase Domain II

Cluster 1

Descend tree into cluster 1

1sbp-1 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like II Domain I
1rkm-1 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like II Domain I
1wdna-1 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like II Domain I
1oibb-1 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like II Domain I
1poy4-1 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like II Domain I
1ah5-1 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like II Domain I
1a7lc-1 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like II Domain I
1amf-1 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like II Domain I
1blf-1 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like II Domain I
1inp-2 [seq. related domains] Alpha and beta (a/b) Sugar phosphatases alpha/beta C terminal domain
1fsab-2 [seq. related domains] Alpha and beta (a/b) Sugar phosphatases alpha/beta C terminal domain
1awbb-2 [seq. related domains] Alpha and beta (a/b) Sugar phosphatases alpha/beta C terminal domain
1al3-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

3dee@compbio.dundee.ac.uk