3 Dee - Database of Protein Domain Definitions

The current cluster is formed at a score of 1.195

Ascend tree (bring in more domains)

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• Classes

• Alpha and beta (a+b) folds
• Alpha and beta (a/b) folds
• undefined folds

• Cluster 1
• Cluster 2

Breakdown into folds	% of cluster	% of class
undefined
undefined from 3Dee	4.17	0.16
Alpha and beta (a/b)
Periplasmic binding protein-like II Domain I from 3Dee	37.50	3.28
Periplasmic binding protein-like II Domain II from 3Dee	41.67	3.65
Sugar phosphatases alpha/beta C terminal domain from 3Dee	12.50	1.09
Alpha and beta (a+b)
D-amino acid aminotransferase Domain II from 3Dee	4.17	0.52

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1a0gb-2	[seq. related domains]	Alpha and beta (a+b)	D-amino acid aminotransferase Domain II
1sbp-1	[seq. related domains]	Alpha and beta (a/b)	Periplasmic binding protein-like II Domain I
1rkm-1	[seq. related domains]	Alpha and beta (a/b)	Periplasmic binding protein-like II Domain I
1wdna-1	[seq. related domains]	Alpha and beta (a/b)	Periplasmic binding protein-like II Domain I
1oibb-1	[seq. related domains]	Alpha and beta (a/b)	Periplasmic binding protein-like II Domain I
1poy4-1	[seq. related domains]	Alpha and beta (a/b)	Periplasmic binding protein-like II Domain I
1a7lc-1	[seq. related domains]	Alpha and beta (a/b)	Periplasmic binding protein-like II Domain I
1ah5-1	[seq. related domains]	Alpha and beta (a/b)	Periplasmic binding protein-like II Domain I
1amf-1	[seq. related domains]	Alpha and beta (a/b)	Periplasmic binding protein-like II Domain I
1blf-1	[seq. related domains]	Alpha and beta (a/b)	Periplasmic binding protein-like II Domain I
1inp-2	[seq. related domains]	Alpha and beta (a/b)	Sugar phosphatases alpha/beta C terminal domain
1fsab-2	[seq. related domains]	Alpha and beta (a/b)	Sugar phosphatases alpha/beta C terminal domain
1awbb-2	[seq. related domains]	Alpha and beta (a/b)	Sugar phosphatases alpha/beta C terminal domain
1al3-1	[seq. related domains]	undefined	undefined

Cluster 2

Descend tree into cluster 2

1a7lc-2	[seq. related domains]	Alpha and beta (a/b)	Periplasmic binding protein-like II Domain II
1ah5-2	[seq. related domains]	Alpha and beta (a/b)	Periplasmic binding protein-like II Domain II
1mrp-2	[seq. related domains]	Alpha and beta (a/b)	Periplasmic binding protein-like II Domain II
1amf-2	[seq. related domains]	Alpha and beta (a/b)	Periplasmic binding protein-like II Domain II
1blf-2	[seq. related domains]	Alpha and beta (a/b)	Periplasmic binding protein-like II Domain II
1sbp-2	[seq. related domains]	Alpha and beta (a/b)	Periplasmic binding protein-like II Domain II
1wdna-2	[seq. related domains]	Alpha and beta (a/b)	Periplasmic binding protein-like II Domain II
1oibb-2	[seq. related domains]	Alpha and beta (a/b)	Periplasmic binding protein-like II Domain II
1poy4-2	[seq. related domains]	Alpha and beta (a/b)	Periplasmic binding protein-like II Domain II
1al3-2	[seq. related domains]	Alpha and beta (a/b)	Periplasmic binding protein-like II Domain II

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Enter PDB code - optionally suffixing the code with the chain id.

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