3 Dee - Database of Protein Domain Definitions

[Search] [HELP]

The current cluster is formed at a score of 0.379

Ascend tree (bring in more domains)

Classes% of representative set
undefined 25.00
Small proteins 25.00
All beta 25.00
All alpha 25.00
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 25.00 0.16
Small proteins
beta-Galactosidase, N terminal fragment from 3Dee 25.00 0.87
All beta
Viral coat and capsid proteins from SCOP 25.00 0.45
All alpha
beta-Lactamase/D-ala carboxypeptidasea inserted domain from 3Dee 25.00 0.49

It is formed by merging the following clusters

Cluster 0

All domains in cluster 0 sub-divide into single membered clusters

2bltb-2 [seq. related domains] All alpha beta-Lactamase/D-ala carboxypeptidasea inserted domain

Cluster 1

Descend tree into cluster 1

1rvf4-1 [seq. related domains] All beta Viral coat and capsid proteins
1bgmp-1 [seq. related domains] Small proteins beta-Galactosidase, N terminal fragment
1reqc-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

3dee@compbio.dundee.ac.uk