3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 3.095

Ascend tree (bring in more domains)

Classes% of representative set
undefined 42.86
Peptides 28.57
All alpha 28.57
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 42.86 0.47
Peptides
Ferredoxin chloroplastic transit peptide from 3Dee 14.29 2.04
Transmembrane helical fragments from 3Dee 14.29 2.04
All alpha
4-helical cytokines fragment from 3Dee 14.29 0.49
Immunoglobulin-binding protein A, fragment B from 3Dee 14.29 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1vlk-2 [seq. related domains] All alpha 4-helical cytokines fragment
1fct-1 [seq. related domains] Peptides Ferredoxin chloroplastic transit peptide
1abz-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1zdd-1 [seq. related domains] All alpha Immunoglobulin-binding protein A, fragment B
1aty-1 [seq. related domains] Peptides Transmembrane helical fragments
1aqt-2 [seq. related domains] undefined undefined
4hb1-1 [seq. related domains] undefined undefined

View superpositions of "checked" domains

Enter PDB code - optionally suffixing the code with the chain id.

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