3 Dee - Database of Protein Domain Definitions


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The current cluster is formed at a score of 2.751

Ascend tree (bring in more domains)

Classes% of representative set
undefined 50.00
Peptides 20.00
All alpha 30.00
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 50.00 0.79
Peptides
Ferredoxin chloroplastic transit peptide from 3Dee 10.00 2.04
Transmembrane helical fragments from 3Dee 10.00 2.04
All alpha
4-helical cytokines fragment from 3Dee 10.00 0.49
Immunoglobulin-binding protein A, fragment B from 3Dee 10.00 0.49
Pheromone proteins from 3Dee 10.00 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1vlk-2 [seq. related domains] All alpha 4-helical cytokines fragment
1fct-1 [seq. related domains] Peptides Ferredoxin chloroplastic transit peptide
1zdd-1 [seq. related domains] All alpha Immunoglobulin-binding protein A, fragment B
1aty-1 [seq. related domains] Peptides Transmembrane helical fragments
4hb1-1 [seq. related domains] undefined undefined
1abz-1 [seq. related domains] undefined undefined
1aqt-2 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1erd-1 [seq. related domains] All alpha Pheromone proteins
1ery-1 [seq. related domains] undefined undefined
2erl-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.


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