3 Dee - Database of Protein Domain Definitions

[Search] [HELP]

The current cluster is formed at a score of 2.266

Ascend tree (bring in more domains)

Go to (document sections)

Classes% of representative set
undefined 47.06
Peptides 11.76
Alpha and beta (a+b) 5.88
All alpha 35.29
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 47.06 1.26
Peptides
Ferredoxin chloroplastic transit peptide from 3Dee 5.88 2.04
Transmembrane helical fragments from 3Dee 5.88 2.04
Alpha and beta (a+b)
Anti-LPS factor/recA domain from SCOP 5.88 0.52
All alpha
4-helical cytokines fragment from 3Dee 5.88 0.49
Anticodon-binding (C-terminal) domain of glutamyl-tRNA Domain I from 3Dee 5.88 0.49
Immunoglobulin-binding protein A, fragment B from 3Dee 5.88 0.49
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase domain from 3Dee 11.76 0.99
Pheromone proteins from 3Dee 5.88 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1vlk-2 [seq. related domains] All alpha 4-helical cytokines fragment
1fct-1 [seq. related domains] Peptides Ferredoxin chloroplastic transit peptide
1zdd-1 [seq. related domains] All alpha Immunoglobulin-binding protein A, fragment B
1erd-1 [seq. related domains] All alpha Pheromone proteins
1aty-1 [seq. related domains] Peptides Transmembrane helical fragments
1ery-1 [seq. related domains] undefined undefined
4hb1-1 [seq. related domains] undefined undefined
2erl-1 [seq. related domains] undefined undefined
1abz-1 [seq. related domains] undefined undefined
1aqt-2 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

2recf-2 [seq. related domains] Alpha and beta (a+b) Anti-LPS factor/recA domain
1gln-3 [seq. related domains] All alpha Anticodon-binding (C-terminal) domain of glutamyl-tRNA Domain I
1ebdc-1 [seq. related domains] All alpha Peripheral subunit-binding domain of 2-oxo acid dehydrogenase domain
1bbl-1 [seq. related domains] All alpha Peripheral subunit-binding domain of 2-oxo acid dehydrogenase domain
1vpu-1 [seq. related domains] undefined undefined
1prb-1 [seq. related domains] undefined undefined
1cuk-3 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

3dee@compbio.dundee.ac.uk