3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 3.075

Ascend tree (bring in more domains)

Classes% of representative set
undefined 42.86
Alpha and beta (a+b) 14.29
All alpha 42.86
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 42.86 0.47
Alpha and beta (a+b)
Anti-LPS factor/recA domain from SCOP 14.29 0.52
All alpha
Anticodon-binding (C-terminal) domain of glutamyl-tRNA Domain I from 3Dee 14.29 0.49
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase domain from 3Dee 28.57 0.99

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1bbl-1 [seq. related domains] All alpha Peripheral subunit-binding domain of 2-oxo acid dehydrogenase domain
1ebdc-1 [seq. related domains] All alpha Peripheral subunit-binding domain of 2-oxo acid dehydrogenase domain
1vpu-1 [seq. related domains] undefined undefined
1cuk-3 [seq. related domains] undefined undefined
1prb-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

2recf-2 [seq. related domains] Alpha and beta (a+b) Anti-LPS factor/recA domain
1gln-3 [seq. related domains] All alpha Anticodon-binding (C-terminal) domain of glutamyl-tRNA Domain I

View superpositions of "checked" domains

Enter PDB code - optionally suffixing the code with the chain id.

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